Gene detail

Gene detail information of Glyur000025s00003342.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25700.1	3.00E-89	beta-hydroxylase 1
NR	AIT98181.1	4.74E-157	beta-carotene hydroxylase [Medicago sativa]
COG	YP_008147268.1	2.00E-32	hypothetical protein SCE1572_04045 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9SZZ8\|BCH1_ARATH	3.00E-143	Beta-carotene 3-hydroxylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A097KXR0\|A0A097KXR0_MEDSA	2.00E-157	Beta-carotene hydroxylase {ECO:0000313\|EMBL:AIT98181.1}

Sequence

Transcript Sequence

>Glyur000025s00003342.1
CCCACCATCTCCATTGCTGCACACTCAGCACAAAGTTGTGATTTATATGCAACCCTCTCTCTCATGCTTCACACCAACCTTCACTTCACTTCACACGCACCGCACACCCCCCCCCCTCTTCTCTCACGCCTCATCGTCCAACTCGAAGCTATCTCAATAATCCATGGCGGCAGGACTCTCCGCCGCCACAGCCTTAAAGCCCTACACCCCTTTCCCTCTCGCTAAGGCAACCCAAACACTATTCTTCTNCCCCTTAACAACGCGTTTCCGCCACGGCACAGACACAGTCCTAATTCGAACCCTCCCGAGAAGAACGACGACGGGATTCACCGTTTGTGTCCTCATGGAGGATCCAAAACAGAGCACCCAGATCATAACGGAGGAAGAAGAAGAGCCTCTCGTTAATCGAGCCAATCCTCAACTCGTGTCACCACGAGTGGCAAATAGATTGGCCAGAAAGAGATCCGAGAGGTTCAATTACCTCGTTGCAGCTTTGATGTCTAGCTTTGCTGTCACCTCTTTGGCTGTCTTTGCCGTCTATTATAGATTCTCATGGCAAATGCAGGGTGGAGAGGTTCCNTGGTCTGAAATGTTTGGCACATTTGCCCTCTCAGTTGGTGCTGCTGTGGGTATGGAGCTTTGGGCAAGATGGGCTCACAGAGCTCTATGGCATGCTTCCTTGTGGCACATGCACGAGTCTCACCATCGACCAAGAGAAGGACCATTCGAGCTTAATGACGTGTTTGCAATAATTAACGCTGNCCCTGCAATCGCTCTCCTCTCATACGGTTTTTTCAACAAGGGATTGGTTCCTGGCCTCTGCTTCGGTGCAGGTCTTGGAATCACGGTGTTTGGGATGGCCTACATGTTTGTCCACGATGGATTGGTTCACAAGAGATTCCCTGTGGGTCCCGTTGCCAACGTGCCCTACTTCAGAAGAGTCGCTGCTGCTCACCAACTCCACCATTCGGACAAATTCAATGGGGTGCCATATGGGCTGTTTTTGGGACCCAAGGAAGTTGAAGAAGTGGGAGGTCTAGAAGAGCTAGAGAAAGCGATAAGCAGGAGAACAGGATCACATACTGGTTCATGACAAAATTAAGCAACTAGCATTACAGCTGTTTAAAAGGATTATNTGTAGAGAACAACACGATGAATGAATGAAATGATTCGAATTTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	355687	357939	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15746	crtZ	EC:1.14.13.129	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003342.1	PF04116.8	FA_hydroxylase	152	269	1.40E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.514
SRR1783600	control	1.502
SRR1783602	moderate drought stress	0.580
SRR1811619	moderate drought stress	0.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.161
DRR006520	Root Summer glycyrrhizin high producing strain	4.228
DRR006521	Root Winter glycyrrhizin high producing strain	10.041
DRR006522	Root Winter glycyrrhizin high producing strain	9.887
DRR006523	Root Summer glycyrrhizin low producing strain	8.456
DRR006524	Root Summer glycyrrhizin low producing strain	8.217
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.123
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.244
SRR2868004	Drought Stress (root)	4.319
SRR2967015	Control (root)	5.026

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.544
SRR9715740	Leaf	6.397
SRR9715741	Leaf	8.440
SRR9715739	Root	0.594
SRR9715742	Root	3.356
SRR9715743	Root	2.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.890
SRR8749028	MeJA induced 9h	1.271
SRR8749029	MeJA induced 9h	0.582
SRR8749030	Uninduced	0.977
SRR8749031	Uninduced	0.225
SRR8749032	Uninduced	0.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.982
SRR8400027	Control - Root	4.011