Gene detail information of Glyur000025s00003333 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52810.1 | 8.00E-114 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003592185.1 | 0 | Ornithine cyclodeaminase [Medicago truncatula] |
| COG | YP_003695819.1 | 3.00E-69 | ornithine cyclodeaminase [Starkeya novella DSM 506] |
| trEMBL | tr|B7FJU0|B7FJU0_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK44922.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 322792 | 323817 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003333.1 | PF02423.10 | OCD_Mu_crystall | 27 | 338 | 2.30E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.096 |
| SRR1783600 | control | 1.112 |
| SRR1783602 | moderate drought stress | 4.280 |
| SRR1811619 | moderate drought stress | 4.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.774 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.408 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.244 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.899 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.700 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.422 |
| SRR2868004 | Drought Stress (root) | 4.480 |
| SRR2967015 | Control (root) | 5.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.456 |
| SRR9715740 | Leaf | 20.833 |
| SRR9715741 | Leaf | 18.268 |
| SRR9715739 | Root | 2.655 |
| SRR9715742 | Root | 2.882 |
| SRR9715743 | Root | 1.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.010 |
| SRR8749028 | MeJA induced 9h | 14.382 |
| SRR8749029 | MeJA induced 9h | 7.656 |
| SRR8749030 | Uninduced | 10.117 |
| SRR8749031 | Uninduced | 10.977 |
| SRR8749032 | Uninduced | 9.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.992 |
| SRR8400027 | Control - Root | 2.657 |