Gene detail information of Glyur000025s00003330 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52860.1 | 0 | ABC-2 type transporter family protein |
| NR | XP_003592180.1 | 0 | ABC transporter G family member [Medicago truncatula] |
| COG | YP_001517187.1 | 5.00E-37 | ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|Q9FLX5|AB8G_ARATH | 0 | ABC transporter G family member 8 |
| trEMBL | tr|G7IDX8|G7IDX8_MEDTR | 0 | White-brown-complex ABC transporter family protein {ECO:0000313|EMBL:AES62431.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 302779 | 304599 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003330.1 | PF00005.22 | ABC_tran | 51 | 198 | 3.70E-28 |
| Glyur000025s00003330.1 | PF01061.19 | ABC2_membrane | 331 | 540 | 8.80E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.126 |
| SRR1783600 | control | 66.190 |
| SRR1783602 | moderate drought stress | 18.375 |
| SRR1811619 | moderate drought stress | 18.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.141 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.185 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.152 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.908 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.120 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.102 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.077 |
| SRR2868004 | Drought Stress (root) | 7.225 |
| SRR2967015 | Control (root) | 5.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.165 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.071 |
| SRR9715739 | Root | 17.357 |
| SRR9715742 | Root | 16.093 |
| SRR9715743 | Root | 15.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.077 |
| SRR8749028 | MeJA induced 9h | 0.037 |
| SRR8749029 | MeJA induced 9h | 0.031 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.944 |
| SRR8400027 | Control - Root | 43.064 |