Gene detail

Gene detail information of Glyur000025s00003314

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G52910.1	timeless family protein
NR	XP_006589510.1	PREDICTED: protein timeless homolog [Glycine max]
trEMBL	tr\|I1LDJ2\|I1LDJ2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G37220.1}

Sequence

Transcript Sequence

>Glyur000025s00003314.1
ATGGACACGGANGGGTTATCCCTAATCTGCGCCGGTCTCGGATCCATCGAAGAGGACGACCAAGGCAACCGAATTGGTTACTCCAAGGGCGAATACTGTCTCGATAACCTGAAAGACTTGCTGAGGTTTCTGCGGCGCGATGACCCTCAAACGCGCGATGTGTTCAAGCAAGTGTGCAAATGGAACATCGTTTCCAAGGATTTGATTCCGATCATCGAGCACTACCACGAGGATCGCAACTTGCTATTGAATGCAGTGAAGGTTCTGGTGTTCCTTACAATGCCGATTGAGCTGGGTTCCACCGATATCTATCTGCAGTTGGAGTATCTGTGGGGTTTGAAGTCTGCAGTGACGAACAGTGATGTCGCTGCGGTAATAGTTTCCTTTCTAGAAAGGCCACTTGAGAATTTGGAATGTGAAGCATTCACCGAGGATGATTGGAAATTGGTACAGCTAGTGCTTACGTTATTTAGAAATATCCTAGCCGTTCAAGAAATCCCGTTGCATCAGAAGTCAGCGGGATATGCTACCCAGTTTATATCGCTTAGAGATAGATTTCTGGAACTTTTGTTCCGTGAGAATGTGATGGATATAATATTGGCCATGTCTGAATATGTTGGTGGTTCTAATGTTTATCTCCGTCAGGATAACTTGCTCCTACTGGAAATTTTCCATTACATTTTTATGGGTCAGGAGCCGGAGTTGATTGTTAGGGGCCATTTGAATGGATTGAAGGTGGATGGAGACTCCCCAGTTTCTCTTGATGGTCTCCAGTCCATTATNGAGGAAGAAAAGAAGAAAAGAGCTATTCATAGGCTCGGCAATATCAGTCGGCATTCACAATTTAGTGGAACATTTGCACGGCTTACCATGGATGGTTCCAAGGCTGTATTTAAGGGAAATCCTAATTCTTCTCGTAATGTGCATCTTAAATCACAAAATGTCACTCGAGGTCCTGCCAAAAAAATTGCATGGGATCATCCAAGGTTTCCTTCAACAAAGGATAAGATTTTGGAGCTGCTTCATGGATTTGTAAATCAGTTTCTTTCTGGAGGATACAATGTTTTGATGCGATCCATTCGTGAAGATATTGAAAAGGAACATCCTGCAATTCAAAAAAGTGATGTAGTTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTCATTTCAGTTTTACAAGTATTCAGCTTCAAAGACCANGGAGGGAAAGGACACGTTTGAGACTTTTGGTGATAAAGATGCTGATACCTCAGATTTCAGTGGTAAAATATGTGGCCCAGTTGCAGCATCCTTGAATGAGTCAATGTTTCAATTAGTCATTTCAAAGTGGCGGCATGCCTATGATGGTCTAAAGGAGACAAATGACTACAAGTTTCTATCTGCAGCTGGTTCTCTTTTAAAAAACATGATTCGCATGCTGGATTTGGTACTTAAATTGTTGCCGGAAGACTCTAAGGAGCCGCAGACAGCTCGCATCCTTCTGTACAAGTTATTTTATGATCAGACTGAAGAAGGGATGACTCAATTCCTCTTGAATTTGATGAAAACGTTTGACACCCACAAACAATGCAAAAGTGATCTTGCAGATTTGGTAGAAATCATTCACAAGGTTGTAAAGCTAATGGATCATCTTCAGTCTCGAGGAACATTAAGGGTGTCAAGAAAATCAAGGAAACTGAAAAAGAAGAAATTTTCCGAAGGAACAGAATCAGGGAATAAACCGCCTGGAGATCATTCTTNCATTCAAAACGAAGCTGGTATCTCCATTGACAATCAATTAGCTGAAAATCAGTCGCTGCAGAAGGAAGACCTACCGAATGCGAATTCCACCGAGCAAGAAGACGTTGTCCCTGATGATAAGGAACATGAAAATGTTGAGGAAGATGGGGTATCCAATCAGCCGCTGCAGAAGGAAGACCTACCGAATGTGAACTCCACCGAGGAAGAAGACGNTGTTCCTNATGATAAGGAACATGAAAATGTTGAGGAAGATGGTATTTCCCAAGTTGGCACGGAACCAATGGGAAACACAAATTCTCAACATCCTAATGAGGATACGTTGGATGACAATGGTGATTTTTCTGAAGATGAACAATTAAACGCAATTAGTGAGGTTGATTTCAATGTTTCAACACTGGTCTCTGCCTTTGCAAATCATAGTATCATTCAGAAATTATGTTGGTTGCTCAAGTTTTATAAAAGCAATTCCCTTGCTATAAATTATTACATAATAAGCATGTTGCGGAGAATTAGTGATGACCTTGAGCTCCATCCGATGCTCTACCAGTTGTCGCTGCTCACGACTTTCCATGACATCCTGGTTGAACAAAAGTCATGTCCCTGCGAGGAATATGCAGATATTGTAGATTTCCTGACCGGTTTGGTCAGAAAGATGCTAAAGAAAATGAAAAAGCAACCNCTCCTGTTCGTGGAAGTCCTTTTCTGGAAGACCCGAAGGGAATGCCATTACATCAATGCGGAATATTTGTTGGATGAGCTTGGTCATTTGAGAAAAGAAAGTATAAATTGGAATAATACTCAAGGAGATGGAGAAATGGGTTCATCCCCAGCAAAGGCGTGGACTCGTAGAAGCATAGCTGATGCACTCGGTGACGATGAAGCTGATGTTGTGATCTCTCATGACCCAGGATTTCAAAATGGAGAAAAGCTTGATGATGCAATTGAAGTCTTTGCATCTACCTCAGGCAGTAAGCATGCAAAAGATGATAATAATGNGGAGCAATTGGTGGAAGATGAATCTCGAATAGCTCCGAAGAGAAAGAAAAAACTTATTCTCAATGCTGACTTGGAGAGACAAATTAAGGATCTTTATGAGAAATTCAAAGATGACAGAAATTGCAGTCGATGTATTGCTGAAGCGCTAGATCCAGATGGTAAAATTTCACCGGCTCAAATTTCCAATAAATTAAAAAAATTAGGGCTAGCAATTGCACCAAGGAAAAAGATGGGTGATGCTGATGGAACTTTTTCAACAAGCCCTAATCAATTAGAGGGTGACGAAATAGCAGGAGTTGCCAATCATAAATCAGCGAATTTGGAGGGAAGCCTGTTGGTCCAGCATCAGCAGAAAAGAAAAAGAGTTCGTGCTTTCAATGAAGATCAGGAAGCTCTGATCAAAGTTCTATATGAGCAATTCAAGGACCATAGAAGATGTAGCTACATGATAGCCAATGCACTGGATGTGGATGGTAAATTCACACCTGCCCAAGTCTCTCGAAAACTTAAGCAGCTTGGCTTATCTGTTCCTCAGAAGAGTTTTGGAGGAAAAATGCACCCGAAGGGTGAGGATCTTATTGATCATTCAAAAGATAGAATGAATGAATCTGATGACGAGACATTGATATCATTGATAGAAAGGAAAAAAGTGGAGAATAGCAAAGTATCAAGCAAACAGTTAGATGAACAGATCGGTGGGGATAAATTGTCAATAGATGATTCTGATGATGAAACTCTCAGCTCTGTTCTCAAGAAAAAAAAGAAGAGTAGCACAATATCTAGTGAACAATTACATGAACACGCCAATGAGGATAAATTGTCAAGAGATGATTCTGATGATGAAATGCTCCGCTCTGCTCTCAATGAAAATCAAGGTTTCATGAACTCCCACCAAGTAGAATATCAGCAAGTGGATCNTGAGTTGGTAGATTCAGATGATGAAGTGGCTGTTAATGCATTTCCTCACAATGCTGTATCCAGAAGGAAGCTAAGAATGGTTATTGATCCTGAGGATGATGATTGAGGTGGAAGCATGATTAAAGTCCAGGTTTATTCGTTTATACTTGATCATTTACTTGATTAAGGTGGAAGCATGATTAAAGATGCACAACGGAATTGACTCATCAGAGGGGNACCATAGGTGAAGGTTTCTCCATGTTCTACTTGTCATCACCCCTGAAGTCAATTAGCTTTGTTTTGCACATAGATAGATGACTTTTTTTGTTACAATGGTGACAAAATTTTGAAATTTGATTATATAATCTCATGTAAATTACTCAAATCTCTCTCACTACTAGTTCAACCATAATGACTTACGTATAAATGACTTTGAGATTAAAAGATATGCATCAAAATTGCCTCGTCAAAGAGGGAATGCAATCCATGAACTTGTATCAATCGATTAGTGGGGACCATATCACAAGAGATTTGCAACTTGAAACGAGTNCATTGTTTTCTCGAGCAATAATCTCTCGGGAGAAATTCCTCACTCCCATGTCTGCTTTGATATTTCTNGGTTACTTTTTTTTGAGGGTCAGTATTTTTTTCCATTTTTTTTCTTGGTTACATGAACCCGTCCTTCAACAATTTTTGGGGCGAACCTTGGCTATTTGGGCAATCACAAGCTGTGGACCTCTTCTTTCAAAACTTTGCCCACGAGATGAAAAGCCCTGCAACACAAGACCAATGGAAGAAGATGATGATGGTAAATCTGAATTTTATTCGTGGTTCTACGTGGGTTTGGGAATTGGATTTGCCTGGGATTTTTGGGTGCCATTTTCTTCAACAGGACATGCAGGCATGATGCTTATTTCAGATTTATGCACCAACTGTATGACATGGTTATCTAAAAGATGTACTGTCCGTTGGAATAAGATATTGAAACCATGGAAAGTAAAGACGCACTTTTTTTAACTAAGCTTTAAACTGAGTCTAATTTTTTTGTTTAAATAA

Protein Sequence

>Glyur000025s00003314.1
MDTXGLSLICAGLGSIEEDDQGNRIGYSKGEYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVSKDLIPIIEHYHEDRNLLLNAVKVLVFLTMPIELGSTDIYLQLEYLWGLKSAVTNSDVAAVIVSFLERPLENLECEAFTEDDWKLVQLVLTLFRNILAVQEIPLHQKSAGYATQFISLRDRFLELLFRENVMDIILAMSEYVGGSNVYLRQDNLLLLEIFHYIFMGQEPELIVRGHLNGLKVDGDSPVSLDGLQSIXEEEKKKRAIHRLGNISRHSQFSGTFARLTMDGSKAVFKGNPNSSRNVHLKSQNVTRGPAKKIAWDHPRFPSTKDKILELLHGFVNQFLSGGYNVLMRSIREDIEKEHPAIQKSDVVVFFQVAEFVTSFQFYKYSASKTXEGKDTFETFGDKDADTSDFSGKICGPVAASLNESMFQLVISKWRHAYDGLKETNDYKFLSAAGSLLKNMIRMLDLVLKLLPEDSKEPQTARILLYKLFYDQTEEGMTQFLLNLMKTFDTHKQCKSDLADLVEIIHKVVKLMDHLQSRGTLRVSRKSRKLKKKKFSEGTESGNKPPGDHSXIQNEAGISIDNQLAENQSLQKEDLPNANSTEQEDVVPDDKEHENVEEDGVSNQPLQKEDLPNVNSTEEEDXVPXDKEHENVEEDGISQVGTEPMGNTNSQHPNEDTLDDNGDFSEDEQLNAISEVDFNVSTLVSAFANHSIIQKLCWLLKFYKSNSLAINYYIISMLRRISDDLELHPMLYQLSLLTTFHDILVEQKSCPCEEYADIVDFLTGLVRKMLKKMKKQPLLFVEVLFWKTRRECHYINAEYLLDELGHLRKESINWNNTQGDGEMGSSPAKAWTRRSIADALGDDEADVVISHDPGFQNGEKLDDAIEVFASTSGSKHAKDDNNXEQLVEDESRIAPKRKKKLILNADLERQIKDLYEKFKDDRNCSRCIAEALDPDGKISPAQISNKLKKLGLAIAPRKKMGDADGTFSTSPNQLEGDEIAGVANHKSANLEGSLLVQHQQKRKRVRAFNEDQEALIKVLYEQFKDHRRCSYMIANALDVDGKFTPAQVSRKLKQLGLSVPQKSFGGKMHPKGEDLIDHSKDRMNESDDETLISLIERKKVENSKVSSKQLDEQIGGDKLSIDDSDDETLSSVLKKKKKSSTISSEQLHEHANEDKLSRDDSDDEMLRSALNENQGFMNSHQVEYQQVDXELVDSDDEVAVNAFPHNAVSRRKLRMVIDPEDDD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	202739	213051	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003314.1	PF04821.9	TIMELESS	26	287	2.30E-32
Glyur000025s00003314.1	PF05029.8	TIMELESS_C	746	1219	5.70E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.708
SRR1783600	control	3.643
SRR1783602	moderate drought stress	2.653
SRR1811619	moderate drought stress	2.512

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.830
DRR006520	Root Summer glycyrrhizin high producing strain	2.716
DRR006521	Root Winter glycyrrhizin high producing strain	1.927
DRR006522	Root Winter glycyrrhizin high producing strain	1.943
DRR006523	Root Summer glycyrrhizin low producing strain	2.296
DRR006524	Root Summer glycyrrhizin low producing strain	2.289
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.867
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.904

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.408
SRR2868004	Drought Stress (root)	5.040
SRR2967015	Control (root)	4.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.955
SRR9715740	Leaf	2.438
SRR9715741	Leaf	3.296
SRR9715739	Root	0.224
SRR9715742	Root	1.271
SRR9715743	Root	0.973

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.236
SRR8749028	MeJA induced 9h	9.030
SRR8749029	MeJA induced 9h	6.214
SRR8749030	Uninduced	4.664
SRR8749031	Uninduced	5.400
SRR8749032	Uninduced	2.597

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.503
SRR8400027	Control - Root	6.133