Gene detail information of Glyur000025s00003312.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 3.00E-108 | chitinase A |
| NR | XP_003536440.1 | 2.90E-162 | PREDICTED: hevamine-A-like [Glycine max] |
| COG | NP_902605.1 | 4.00E-13 | chitinase [Chromobacterium violaceum ATCC 12472] |
| Swissprot | tr|P23472|CHLY_HEVBR | 1.00E-139 | Lysozyme (Precursor) |
| trEMBL | tr|I1LDJ0|I1LDJ0_SOYBN | 1.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G37200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 193046 | 193894 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH18 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003312.1 | PF00704.23 | Glyco_hydro_18 | 11 | 232 | 1.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.668 |
| SRR1783600 | control | 1.479 |
| SRR1783602 | moderate drought stress | 1.074 |
| SRR1811619 | moderate drought stress | 1.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.764 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.507 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.257 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.040 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.427 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.052 |
| SRR2868004 | Drought Stress (root) | 134.894 |
| SRR2967015 | Control (root) | 163.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.976 |
| SRR9715740 | Leaf | 11.973 |
| SRR9715741 | Leaf | 8.325 |
| SRR9715739 | Root | 8.287 |
| SRR9715742 | Root | 3.337 |
| SRR9715743 | Root | 4.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 164.765 |
| SRR8749028 | MeJA induced 9h | 306.445 |
| SRR8749029 | MeJA induced 9h | 121.154 |
| SRR8749030 | Uninduced | 254.142 |
| SRR8749031 | Uninduced | 49.749 |
| SRR8749032 | Uninduced | 73.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.000 |
| SRR8400027 | Control - Root | 6.832 |