Gene detail

Gene detail information of Glyur000025s00003305

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43770.2	1.00E-33	RING/FYVE/PHD zinc finger superfamily protein
NR	XP_004496494.1	2.46E-143	PREDICTED: uncharacterized protein LOC101501681 isoform X1 [Cicer arietinum]
trEMBL	tr\|V7BGB1\|V7BGB1_PHAVU	1.00E-132	Uncharacterized protein {ECO:0000313\|EMBL:ESW15511.1}

Sequence

Transcript Sequence

>Glyur000025s00003305.1
CTGGTTACAACTTAACACGCGCACCCACTTCCCCTTTCGGCCTTTCGTGTTTCCAGTTCCAGAACATAGAAACGGGTGCGTCATGCGTGGGGTGCGGGGTTTTGTACGGTGGCGTGCATAAGCAAAACCTTTGTTTTTGTTCTCTCAGTTACACATNACATATTAAATTGGAACATTCCACGACATTGAATCTTCCCTTTGATAACCTAATCAAGGCCTTCCTTCGCTGTGGTGCCCCTTGAACACCTCACATTTCACAACACAATGGAAACTGTCTGTCTCAAGTGTGGTGATATAGGTTTTTCAGAGGCGATGGTTTTTTGCAACGGGTGTCAGGCTTATGCTCTGCATAGGTACTGTTTAGATGGGCCTGTGATTCTTTATGATGAGGTTACATGGTTTTGTGAGGATTGTGAACCAAAGCCAATAGTACTATATTCTCTTGACGAATCTGCACCTCACTCATCTGAAACAAGTGACTCTGTAAATTTGGCAAACAATGCAATCCAAGCTGAAAGTGAACTAAAAAATTGCATAAAGAAAAGCAATCAACAGCAACAAAAGAAGATTGAAGAGCAGCAGGAGAAAGGAAAAGTTAACTCTGGCTTAGTTACTGAAGCAAAGGTCCTGTTATCTGACAGTCGCAGTTCACCTGAGCTTGAGCATCCTCAATGTAGTATCAGCTCTGAGCAAGAAAGCGAATCTAAAAATGAGTGTGGACCAGTTCCAAGAGATGCAGCTAATTCTAATGTAGGTCCCAGATCTGTTCAAGTCTCTCAAGTAGCTGCCTCTGATGATTTAAANAGTGTAGAATTATTTTGTCATGTTGATGCACAGCCTATGGCTGATCCAATCTGGAGGGGAAATTTGAACTTCTTTGATGAAACTATTGGTACTGTCAGTGGACTTCTGGCCCATTTGTCCAGTTTAGCATGCTCCAAAGTTGCGGAGGAGACATTACTTTTCCCAGAAGGGCTTCGTGCNGATCTGCTTCCCACATCCGTGGTGTGGCCTAAAAGTTTCAAGAAGAAGGGACCAACTGATAAGAGCATTGCTCTTTATTTCTTTCCTGAGAATGAAAGATCCGAAAAAGTCTTTGACATNCTGGTTGATGACATCATTCGCGATGAACTTGCTGTAAGAGTCGTGGCTAAAAATGCAGAGCTTTTAATTTTTCCTTCTACCTTGCTTCCAATCCAACATAGGAGATTTCAAGCTAAATATTACTTATGGGGTGTCTTCAAAGTAAAGCAAACTTCACAAAAGACAGATGATGCTATGTGCCGAGAGAATGCTGATGTTGCCAAGCTCTTGACTTGGCATAACCATAGTTCATCGAATACTTTGAGCAATAGTGGTAGTCATGGTTCTGATATATAGTACTCCTGTGCTTCTGGTCACTGATATATCAGTCACATATATATATGGGCATGATAGGAAGATGGAATGAGTAGGATGTGATGACAACGAGTTGGGATGGCTTGTACCCTTTATGTGACTCTCAAGATGCTTAAATGTTTATATATAAAATAAAATAAATATAAATGTTATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	152767	156160	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.395
SRR1783600	control	1.347
SRR1783602	moderate drought stress	1.466
SRR1811619	moderate drought stress	1.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.367
DRR006520	Root Summer glycyrrhizin high producing strain	2.416
DRR006521	Root Winter glycyrrhizin high producing strain	2.724
DRR006522	Root Winter glycyrrhizin high producing strain	2.727
DRR006523	Root Summer glycyrrhizin low producing strain	1.835
DRR006524	Root Summer glycyrrhizin low producing strain	1.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.860

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.931
SRR2868004	Drought Stress (root)	4.323
SRR2967015	Control (root)	3.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.145
SRR9715740	Leaf	5.001
SRR9715741	Leaf	4.428
SRR9715739	Root	0.222
SRR9715742	Root	1.229
SRR9715743	Root	1.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.480
SRR8749028	MeJA induced 9h	3.787
SRR8749029	MeJA induced 9h	9.275
SRR8749030	Uninduced	1.982
SRR8749031	Uninduced	1.197
SRR8749032	Uninduced	2.396

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.720
SRR8400027	Control - Root	6.016