Gene detail

Gene detail information of Glyur000025s00003291.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38470.1	2.00E-129	ACT-like protein tyrosine kinase family protein
NR	XP_006589493.1	0	PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Glycine max]
COG	YP_001958461.1	3.00E-37	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1.00E-77	Serine/threonine-protein kinase HT1
trEMBL	tr\|K7LKX5\|K7LKX5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G37071.2}

Sequence

Transcript Sequence

>Glyur000025s00003291.1
CCAAACCAGAGTCAAAGATCCTCTTCCTCTTTCCCNCTGCACGCGATACTTTTCTCGGCAATTCACCCCGCTTTCTCGCACTTTCTCTTTCTCGGTCATGCGACCTTGAACATAGAAAGCAATGGATTTGGCTGAAGGCGTGGGAGAGAGCTCGTCCCCCCCGCGCACCTTCCCAGGCGGTTACAGCAACTACGATGTGAGGACCGACGTGTACAATCGCTTGGTGGAAACCGGTCACGAACAAGCCGTGTCGAATCCCGAGTTCCGTGAACAGCTTGAAGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTTGATGTTAATGTCGATAGAGCTGAAGATGTTCTACTGCATCGGAGTCTTCTTGCTTTGGCAAGAGACCCGGACAAGCGCCCCGTCTACCATATACGCTTTTTGGAGGTATTGCTCTCAATTTGAATATTTCCACTAGGACAGATGATGAAGATCAACAAATTGGCCAGGGATCTTGCAACTGAGTTTGAGCCTTGCTCAAAGCTTGAGGACCTAAATCTGGATGTTATAAAGAACTCCAAGGAGACACAGGAAAAATTTCTTGCTGACAACCTTTCGGAGAGGCATGAACATTCAAGTGTCCCAGTTCATGAAATAATATTTTCCACTGTTGACAAGCCAAAGCTTTTAAGCCAGCTGTCCGCTTTGCTGTCTGATATTGGGCTTAACATCCGTGAAGCACATGTATTTTCCACAACTGATGGCTACTCCCTCGANGTTTTTGTGGTGGATGGATGGCCACTAGAGGAAACAGATGGTTTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGTGAGGTGCANTGTGTCTCCTTGACTTTGTATCTACAAATTCATGGGTCATGGTCTCATTCATCAAATTCTCATTCAGCTGTAGAGAAAGCCTTAGCAGCAGAAGGAAAATCTGGAGAATGGGAAATAGACAGGAGGTTGTTNAAGATCGGAGAGAGAATAGCATCAGGATCCTGTGGAGATTTGTATCATGGAGTTTATCTTGGTGAAGATATTGCTGTTAAGGTTCTGAGATCTGAGCAACTGAATGATGCCTTAGAGGATGAGTTTACTCAAGAAGTAGCAATTTTAAGACAGGTGCATCATAAAAATGTCGTTCGTTTCATTGGTGCATGTACAAAGTCTCCACATTTCTGCATAGTAACAGAGTATATGCCTGGAGGGAGTTTGTATGATTACTTGCACAAAAATCATAATGTCTTGGAGCTGTCTCAATTACTAAAGTTTGCAATTGATGTCTGCAATGGTATGGAGTATTTGCATGGAAACAACATAATTCACAGGGATCTGAAGACGGCCAATTTGCTGATGGATACACACAATGTTGTTAAAGTGGCAGATTTTGGAGTTGCCCGGTTCCTAAATCAGGGGGGAGTGATGACTGCAGAAACTGGAACATATAGATGGATGGCACCGGAGGTCATAAACCATCAGCCTTATGATCAGAAGGCAGATGTATTCAGTTTTTCCATAGTACTGTGGGAACTAGTGACAGCAAAGGTACCGTATGATACCATGACTCCACTACAAGCTGCTTTGGGTGTGAGACAGGGACTGCGACCAGAACTTCCAAAGCATGGACACCCTAAACTATTAGATTTGATGCAAAGATGTTGGGAAGCAATTCCAAGCAACCGTCCATCCTTCAATGAGATAAGAGTTGAACTTGAAAATCTTTTTCTGGAAACTGAGAATGATTCAGAAGCTAATGGTGCTTGACTTTTTATGCACACACTATTGTATTCCAGTTATTTTCGGGAGGTTGGGGTTACAATCATCCCTCTCCTGAATCCTGATTTTGCTTTTCAAATAGCTGTACAGTTTTCCACGTACCCTTTTTGCACCGAGGGAAAAAGGAGTTCACANAAGCTGACCAATACAGAGCAAGAAAATGTAAAGAGGCATACTAATGTTATAGTTGATAATACTTAATATATATCCCAAGGNAAAATCGCGTCAAACTTCACTGTGAAAAGATGTTTTGTTAAGAGGAATGGTTCCACGCTGATATAGATGTGTTCTTTCAATTGATGTAAAATCAATGAAGTGTATGCTGAGGGTAATTATTCTGTTGAGCAATTAATGTTTTGTATTGTATATTAATATTAAATATGAATATTAATGACAGGCATGGAACGATGAGCCCAGGTATCTAAGCTAGCTTAATGCAAAGTGTTACCTTTTCCGTGTTATCATCATTATTAATTCTTTGTTTGGTCCCACAAACCAGTGTACAATACAGTTTATACAGACAGTNGATGTAACTAAATAGTAGTTAACTTCTGTTAAAGTTGATTCTATTTGTTTTGGTGAACAGATGACATGTTAAACAAGCATAGATGGCCATTGTGTAGGTAGTAAAATTCTTATGATTAGATGTAACAAAATGATAAAGCTCAATAGCTTCGTCATACACATTCTTGATGTGCTGTTGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	67266	79236	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0008152 metabolic process

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016597 amino acid binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003291.1	PF01842.20	ACT	56	103	4.60E-06
Glyur000025s00003291.1	PF07714.12	Pkinase_Tyr	172	418	4.80E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.519
SRR1783600	control	10.151
SRR1783602	moderate drought stress	18.194
SRR1811619	moderate drought stress	18.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.684
DRR006520	Root Summer glycyrrhizin high producing strain	14.352
DRR006521	Root Winter glycyrrhizin high producing strain	29.473
DRR006522	Root Winter glycyrrhizin high producing strain	29.341
DRR006523	Root Summer glycyrrhizin low producing strain	17.928
DRR006524	Root Summer glycyrrhizin low producing strain	18.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.528
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.555

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.704
SRR2868004	Drought Stress (root)	20.596
SRR2967015	Control (root)	23.445

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.841
SRR9715740	Leaf	11.078
SRR9715741	Leaf	15.823
SRR9715739	Root	2.847
SRR9715742	Root	8.709
SRR9715743	Root	8.271

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.555
SRR8749028	MeJA induced 9h	24.406
SRR8749029	MeJA induced 9h	18.354
SRR8749030	Uninduced	17.804
SRR8749031	Uninduced	15.654
SRR8749032	Uninduced	12.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.231
SRR8400027	Control - Root	15.026