Gene detail information of Glyur000025s00003289 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43660.1 | 7.00E-76 | Vacuolar iron transporter (VIT) family protein |
| NR | XP_003592125.1 | 2.43E-120 | Nodulin-like protein [Medicago truncatula] |
| COG | YP_003647158.1 | 5.00E-37 | hypothetical protein [Tsukamurella paurometabola DSM 20162] |
| Swissprot | tr|Q9M2C0|VITH4_ARATH | 6.00E-100 | Vacuolar iron transporter homolog 4 |
| trEMBL | tr|G7ID02|G7ID02_MEDTR | 9.00E-121 | Vacuolar iron transporter-like protein {ECO:0000313|EMBL:AES62376.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00025 | 49079 | 49753 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000025s00003289.1 | PF01988.14 | VIT1 | 47 | 119 | 1.50E-25 |
| Glyur000025s00003289.1 | PF01988.14 | VIT1 | 127 | 218 | 2.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.080 |
| SRR1783600 | control | 28.897 |
| SRR1783602 | moderate drought stress | 31.984 |
| SRR1811619 | moderate drought stress | 32.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.392 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.331 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.452 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.858 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.147 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.811 |
| SRR2868004 | Drought Stress (root) | 103.546 |
| SRR2967015 | Control (root) | 69.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.186 |
| SRR9715740 | Leaf | 11.335 |
| SRR9715741 | Leaf | 13.032 |
| SRR9715739 | Root | 70.146 |
| SRR9715742 | Root | 101.803 |
| SRR9715743 | Root | 114.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.299 |
| SRR8400027 | Control - Root | 37.347 |