Gene detail

Gene detail information of Glyur000025s00003282.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21200.1	5.00E-131	sequence-specific DNA binding transcription factors
NR	XP_003536428.1	0	PREDICTED: uncharacterized protein LOC100812134 [Glycine max]
trEMBL	tr\|I1LDG7\|I1LDG7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G36980.1}

Sequence

Transcript Sequence

>Glyur000025s00003282.1
ATGGAAGGAAATTTGTCACAGGGAGGAATACTTCAAGGTGGGACTTCTTTTGGTGGCTTTGATTTGCCAGGATCACTTCAGGTTCATCATCAAGCACAGCATCCCCACACCATGCACCAACATCAAACTCATCCGCGTCAAGGGTCTTCATTACATTCCTCGGTTCATGATGGTTTTCCACTCACTGTGGGAACCTTACAGAACTGTGACCAGACCATTTCATTGACAGACTTTAGTAAGGGAGACAGAAGCAAAAACTCTGCAAGTGAGGAAGATGAGCCTAGCTTTACTGAGGATGGTGGTGATGGTTACCACGAAGCGGGTAGAGGTAAAAAGGGATCACCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTAAAGCTTCTCATAACGGCTGTTTCTTATATAGGTGAGGATATAACTTCTGATGGTGGTGGTAGTGGAAGAAGGAAATTTGCTGTCCTACAGAAGAAGGGTAAGTGGAAATCTGTATCCAAGGTCATGGCTGAAAGGGGTTATCATGTTTCACCCCAGCAATGTGAGGATAAATTCAATGATCTGAATAAAAGGTATAAAAAGCTCAACGATATGCTAGGGAGGGGCACTTCTTGTCAGGTTGTTGAAAATCCTGCNCTGTTGGATGTAATAGATTATCTTTCCGAGAAAGAAAAGGACGATGTTCGGAAGATATTAAGCTCAAAACACTTGTTCTATGAAGAGATGTGTTCTTACCATAATGGTAATAGGTTGCATTTACCTCACGATCCTGCGTTGCAACGTTCGCTGCACCTAGCTCTCCGAAATAGAGATGATCATGATAGTGATGATATCAGAAGGTCCCATCTTGACGATCATGATGAAGATGACCAAGATGAGGAAATCAATGATCATGATGATTTTANAGAGCATTGTTCTTCCCATGGTGATGGCAGAGCAATATATGGGCCATTAGGTGGATCTATGAAGAGATTGAAACAAAGCCAAGGCCAAGAAGATGCTAATACTTTTGGCAATTCTTCAAATTGTCAAGATTATAACAAANGTTCATATCCCCATGGGCAGATGATCCATTCTGATGTTAATCAAGGTTTACCTGAAAGCATGAGAGCAGCTTGGTTACCGAAGCATTGGGTTGAATCTCGCCAACTTCAGTTAGAAGAGCAAAAGCTACAAATTCAGGTTGAGATGTTGGAACTGGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGAGAGTTGGAGAAGCTGAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGCTTGGCTTTAGAACTGAAGCGAAAGGAAATGGGCGCTGGCTTTAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00025	10812	12158	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix
EAR motif-containing Proteins	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000025s00003282.1	PF13837.1	Myb_DNA-bind_4	118	243	5.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.299
SRR1783600	control	21.036
SRR1783602	moderate drought stress	28.240
SRR1811619	moderate drought stress	31.103

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.215
DRR006520	Root Summer glycyrrhizin high producing strain	24.767
DRR006521	Root Winter glycyrrhizin high producing strain	43.952
DRR006522	Root Winter glycyrrhizin high producing strain	38.167
DRR006523	Root Summer glycyrrhizin low producing strain	32.290
DRR006524	Root Summer glycyrrhizin low producing strain	32.526
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.200
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.260

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.688
SRR2868004	Drought Stress (root)	61.603
SRR2967015	Control (root)	49.887

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.228
SRR9715740	Leaf	31.000
SRR9715741	Leaf	37.767
SRR9715739	Root	10.294
SRR9715742	Root	40.073
SRR9715743	Root	37.585

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.107
SRR8749028	MeJA induced 9h	32.359
SRR8749029	MeJA induced 9h	26.347
SRR8749030	Uninduced	34.051
SRR8749031	Uninduced	42.759
SRR8749032	Uninduced	25.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.653
SRR8400027	Control - Root	59.534