Gene detail

Gene detail information of Glyur000024s00006662

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G17650.1	AMP-dependent synthetase and ligase family protein
NR	XP_003629166.1	2-succinylbenzoate-CoA ligase [Medicago truncatula]
COG	YP_005884731.1	acyl-CoA synthetase [Marinobacter adhaerens HP15]
Swissprot	tr\|Q9SEY5\|AAE2_ARATH	Probable acyl-activating enzyme 2
trEMBL	tr\|G7L9H4\|G7L9H4_MEDTR	Long-chain acyl-CoA synthetase {ECO:0000313\|EMBL:AET03642.2}

Sequence

Transcript Sequence

>Glyur000024s00006662.1
AAAAAGAGAAGAAGAAGAAACATAGAAATCATCGTCGCTATCGGAATTGTATGTACCCCACCCCACTTCATTGTTTTATTTTCATTCTNTCCGAGTGGCTATTTCTAACACATTGAACCATCACTGTGGTTAGTGGTTACCCCTTACCATGAACAACATCTTCAAGAGCATGCTCTGGACTCGTTCTCTAAGACACTTCAGACCAACTCACATCTACCCAACTCATCATNTACGTAAATTTTGCAACTTTTCTCATGACCCTGATCCGGGTTCATGGGAATCGATGGAGGGTCTACTTCGTTGCTCTGCAAATTCCAATCCTTTGTCTCCTATCAGCTTCCTAGAGAGAGCAGCAAAGGTTTGCAGAGACAGAACCTCTCTNGTGTATGGTTCTTTGATGTATAGTTGGGGTGAAACCCATCAACGGTGCCTGAAACTTGCCTCTGCTCTGTCCCAGTTGGGGATTTCCCGTGGGGATGTGGTTGCCACCCTAGCACCTAATGTTCCTGCAATGTATGAGCTGCATTTTGCAGTCCCAATGGCTGGAGCCATTCTTTGTACTCTCAATTCACGCCTCGATGCAACTATGGCCTCAGTCCTATTGGAGCATTCCAAAGCGAAGATCCTTTTTGTAGACTACCAACTACTTGAAATTGCTAGGGGAGCATTGGACCTGCTAGGCAAAAGAGCAAGGACATTGCCAATTCTAGTCTTAATTAATGACCTTGATTGCTCTTCTACCATTGACTTTACTTCAGTTAGTCATGAGTATGAGGGACTTTTGGCTGTTGGGCTTAATGGTTTTGATATTGTGAGGCCACATAGTGAATGGGATCCTATAAGTGTAAATTACACCTCTGGCACCACATCTAGGCCTAAAGGAGTCGTCTACAGTCACAGGGGTGCTTATNTGAACTCTCTAGCAACGGTTCTACTGTTTCGAATGGACCTCTTTCCCGTTTATCTCTGGAATGTTCCATTTTTCCATTGCAATGGGTGGTGCCTCCCTTGGGGAGTGGCAGCACAATTAGGGACCAATGTTTGTCTACGGCAAGTCTCTGCAAAGAACATATTTGACAATATAATTCAGCATAAGGTGACACACATGGGAGGAGCTCCTACAGTGTTGAACATGATTGTGAATTCTGCATCGACCGATAGAAAGNCACTCAATCACAAGGTGGTAGTGATGACGGGAGGTTCTCCTCCACCGCCACAGATCCTTTCCAAGATGGAGGAAATTGGTTTTAGCGTTTCTCACCTGTATGGCCTCACAGAAACATACGGTCCGGGGACATTTTGTGCATGGAGACCAGAATGGGACATGTTGCCTCCTGGAGAAAAATCAAGGATGAAAGCCAGGCAGGGGGTTCCCCATGTGGGTTTGGAGGAAATTGAAGTCAAAGATCCTGCCACAATGGAAAGTGTTCCAGCTGATGGCAAAACAATAGGNGAGGTAATGTTTAGAGGGAATACAGTGATGAGTGGATATTTTAGAGATTTGAAAGCAACAGAGGAGGCTTTCAAAGATGGGTGGTTTCATAGTGGGGATCTAGCTGTGAAACACTCTGATGGTTACATAGAAATCAAGGACAGATTGAAGGATATAATAGTCTCTGGAGGAGAAAACATTAACTCAGTTGAGGTAGAAACAGTTCTGTATAGTCATCCAGCAGTTCTTGAAGCTGCAGTTGTTGCAAGGCCAGATAATCATTGGGGTCAAACTCCTTGTGCGTTTCTGACGTTGAAAGAGGGGTTTGATGTAGATGCTCAAGAAATAATTAACTTCTGCAGGGACANTTTGCCCCATTACATGGCTCCTAAAACAGTCATTTTTCAAGATATGCCAAAAACTTCAACAGGGAAGATACAGAAGTATATTCTGAGGGAGAAGGCTAAGGCTTTGGGCAGCATTTCTGGACCCCAAGAGAGTAACGGAAAGTTAATTAGTTGTCAAACTGGAAGATAATCTTTAGTTGTCACAGTGGCAACTAAGCAATGATTATTTCTTTCTACTTGTCCATAGCTAATGCAAACCATATCTGATATATATGTATCACAAATTGGGCAGCAAGTAATAAAATCTTTAGTCCTTCTAGCATGCTGGTTTTTAACATTAATTATAACATAAACAGAAGAAACAAGTAATCCAGAATATGAAGTGGAAGGGAGCATTTAATTTGAGCTACTGTTTGCAATTTTTTGGGGGAAAGTTCATGCTTGCTATTCAGGAATTCTTTGGGTGTACAGTTGACATCCCTGTAAGAAACCTGGTTCAGCAATGGACTACAGAAGGACAGATACACATACACTAGGCTTTGATGAAACGCTAGAAGATGCAGCAGAAGAATATTTCAAAACTCTATGGTCATTTATGAGGTGCGTTTTAGGGTGGTCAAAGACAAAAATTTATCCACCAAACCCCAATCCAATATGACCTGGTATACCAGGTAATACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	572453	576673	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006662.1	PF00501.23	AMP-binding	66	490	3.70E-80
Glyur000024s00006662.1	PF13193.1	AMP-binding_C	499	573	1.50E-20
Glyur000024s00006662.2	PF00501.23	AMP-binding	66	490	3.70E-80
Glyur000024s00006662.2	PF13193.1	AMP-binding_C	499	573	1.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.525
SRR1783600	control	1.596
SRR1783602	moderate drought stress	1.560
SRR1811619	moderate drought stress	1.558

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.218
DRR006520	Root Summer glycyrrhizin high producing strain	3.461
DRR006521	Root Winter glycyrrhizin high producing strain	4.118
DRR006522	Root Winter glycyrrhizin high producing strain	3.687
DRR006523	Root Summer glycyrrhizin low producing strain	2.150
DRR006524	Root Summer glycyrrhizin low producing strain	1.826
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.148

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.848
SRR2868004	Drought Stress (root)	30.492
SRR2967015	Control (root)	34.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.979
SRR9715740	Leaf	10.545
SRR9715741	Leaf	11.909
SRR9715739	Root	3.416
SRR9715742	Root	3.598
SRR9715743	Root	3.818

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.953
SRR8749028	MeJA induced 9h	15.746
SRR8749029	MeJA induced 9h	3.573
SRR8749030	Uninduced	11.220
SRR8749031	Uninduced	28.090
SRR8749032	Uninduced	11.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.468
SRR8400027	Control - Root	5.040