Gene detail

Gene detail information of Glyur000024s00006661

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35260.1	1.00E-149	isocitrate dehydrogenase 1
NR	XP_003629164.1	0	Isocitrate dehydrogenase [Medicago truncatula]
COG	YP_004102003.1	2.00E-88	isocitrate dehydrogenase [Thermaerobacter marianensis DSM 12885]
Swissprot	tr\|Q8LFC0\|IDH1_ARATH	0	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBL	tr\|G7L9H2\|G7L9H2_MEDTR	0	NAD-dependent isocitrate dehydrogenase {ECO:0000313\|EMBL:AET03640.1}

Sequence

Transcript Sequence

>Glyur000024s00006661.1
ATGGCGAGAAGATCCTTACCGCTCCTCAAACACCTCCTGTCCCGATCCCGATCCGATTCCGATAGGACAATCGGGTTCGGGTCGAGGCGATGGGTGACGTACATGCACCGGCCGGGCGACGGAACCCCACGTGCGGTGACCCTGATCCCCGGCGACGGGATCGGTCCACTGGTAACCGGAGGTGTGGAACAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTTCGAAGTGCACGGGGACATGAAAGCTGTTCCGACGGAGGTGATGGAGTCGATCCGTAAGAACAAGGTGTGCCTGAAAGGTGGGTTGGTTACCCCAATGGGTGGTGGTGTCAGTTCCCTCAACGTCCAGCTCAGGAAGGACCTTGATCTCTACGCTTCACTCGTCAACTGCTTCAACCTCCCCGGCTTGCCCACGCGCCACGACAACGTCGACATCGTCGTGATAACGAAGTTCTGTTCTGAGCGTATTGCTAAGTATGCGTTCGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACAGCTGTACACAAAGCAAACATAATGAAGCTTGCGGATGGGTTGTTCTTGGAGTCTTGTCGAGAGGTTGCCACCAAGTATCCTGGGATTAAGTATAACGAAATCATTGTGGACAATTGCTGCATGCAGCTTGTTGCGAAGCCCGAGCAGTTTGATGTCATGGTGACCCCAAATCTCTATGGAAATCTAGTTGCAAATACTGCAGCAGGTATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAACGTTGGGGCCGAGCACGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGCAGTGATAAAATACTGGAGCAAAAGACAGCCAACCCNGTGGCTCTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTTCAATTCCCTGCATTTGCTGACCGTTTGGAAACTGCTGTGGAACAAGTCATTCTNGAGGGCAAATACAGGACAAAGGATCTTGGAGGNACAAGCACCACCCAAGAGGTTGTCGATGCAGTGATAGATGCTTTAGATTNATTCATTCTAGTTGCTGATTTTCCCTAAGTGCAAAGTCAGCCTCGTATATTCTTTTCTAGNTAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	563029	566411	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00030	IDH3	EC:1.1.1.41	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Citrate cycle (TCA cycle)	map00020

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0000287 magnesium ion binding

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006661.1	PF00180.15	Iso_dh	146	342	3.80E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.758
SRR1783600	control	33.706
SRR1783602	moderate drought stress	23.754
SRR1811619	moderate drought stress	23.773

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.812
DRR006520	Root Summer glycyrrhizin high producing strain	35.343
DRR006521	Root Winter glycyrrhizin high producing strain	29.307
DRR006522	Root Winter glycyrrhizin high producing strain	28.973
DRR006523	Root Summer glycyrrhizin low producing strain	40.019
DRR006524	Root Summer glycyrrhizin low producing strain	41.782
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.002

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.051
SRR2868004	Drought Stress (root)	67.573
SRR2967015	Control (root)	68.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	62.626
SRR9715740	Leaf	46.718
SRR9715741	Leaf	86.832
SRR9715739	Root	32.740
SRR9715742	Root	38.703
SRR9715743	Root	38.390

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.776
SRR8749028	MeJA induced 9h	31.034
SRR8749029	MeJA induced 9h	28.944
SRR8749030	Uninduced	26.024
SRR8749031	Uninduced	17.358
SRR8749032	Uninduced	23.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.353
SRR8400027	Control - Root	59.713