Gene detail

Gene detail information of Glyur000024s00006635

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G12120.2	4.00E-163	fatty acid desaturase 2
NR	KEH41705.1	0	microsomal omega-3 fatty acid desaturase [Medicago truncatula]
COG	YP_007147555.1	2.00E-76	fatty acid desaturase [Cylindrospermum stagnale PCC 7417]
Swissprot	tr\|P48631\|FD6E2_SOYBN	0	Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2
trEMBL	tr\|A0A072VUB5\|A0A072VUB5_MEDTR	0	Microsomal omega-3 fatty acid desaturase {ECO:0000313\|EMBL:KEH41705.1}

Sequence

Transcript Sequence

>Glyur000024s00006635.1
ATGAACACCACCGTCCATGAACCAGGGAGAATTAAACATATTGATATAAACCTTCTCCTTCTGCTTCAGGTTTGCGTGAAGATGGGAGCCGGTGGCCGTACTTCTNTTCCCCCTCCACAAAGGAACAGTGAGAATAAGCGAGTCCCACATGAAAAACCACCNTTCACTCTCGGCCAAGTCAAGAAAGCCATTCCCCCACACTGTTTTAACCGCTCCTTGATTCGCTCATTCTCCTACGTCGTTTTCGACCTCACCATCGCCTCATTCCTCGCCTATGTCGCAGTCAATTACTTTTCTACCCTTCCGCACAACCTCTCCCTTTGGGCCTGGCCCATATATTGGGCCATTCAGGGCTGCGTTCTAACCGGTGTTTGGGTCATAGCCCACGAGTGTGGCCACCACGCCTTCAGCGATTACCAATGGGTCGATGACTTAGTGGGCCTTATTCTCCACTCATTCCTCTTAGTCCCTTATTTCTCGTGGAAATACAGCCACCGCCGCCACCACTCCAACACCGCATCTCTTGAACGCGACGAGGTTTTTGTCCCTAAGAAAAAATCTAGTATGGGTTGGTACTCCAAATACCTTAACAACCCACCGGGGAGAGTTCTCACGCTTGTGATTACACTCACTCTTGGTTGGCCCCTTTACTTAGCTTTCAACGTTTCGGGAAGACACTATGATACTTTTGCTTGCCACTATGACCCATATGGGCCCATTTATTCAGACCGTGAAAGGCTTCAAATTTATGTATCCGATGCTNGTGTGCTTGCGGTGTTTTATGGGCTTTACCGTCTTGTTTTGGCCCAAGGACTTTCTTGGGTTGTTTGTGTCTATGGGGTGCCACTTTTGGTTGTTAATGGGTTCTTGGTTTTGATTACTTATTTGCAACACACTCACCCTGCTTTGCCACACTATGATTCCTCTGAGTGGGATTGGCTTAGAGGTGCTTTGTCCACTGTGGATAGAGACTATGGGATTCTGAATAAGGTTTTCCATAACATTACTGATACCCATGTTGTGCATCACATGTTTTCCACAATGCCTCATTACCATGCTATGGAGGCTACTAAGGCTGTGAGACCCATTTTGGGAGATTATTATCACTTTGATGGGACTCCTATTTTCAAGGCAATGTGGAGGGAGGCTAAGGAGTGTATTTATGTTGAGCCTGATGAAGGTAGCCAGAATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	393057	397798	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10256	FAD2	EC:1.14.19.6 1.14.19.22	Fatty acid metabolism	map01212
			Biosynthesis of unsaturated fatty acids	map01040

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006635.1	PF11960.3	DUF3474	45	91	1.10E-08
Glyur000024s00006635.1	PF00487.19	FA_desaturase	106	368	8.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.213
SRR1783600	control	9.353
SRR1783602	moderate drought stress	4.532
SRR1811619	moderate drought stress	4.486

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.093
DRR006522	Root Winter glycyrrhizin high producing strain	0.001
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.558
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.531

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.235
SRR2868004	Drought Stress (root)	21.024
SRR2967015	Control (root)	18.017

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.461
SRR9715740	Leaf	0.733
SRR9715741	Leaf	1.164
SRR9715739	Root	26.874
SRR9715742	Root	7.843
SRR9715743	Root	14.382

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.621
SRR8749028	MeJA induced 9h	2.656
SRR8749029	MeJA induced 9h	0.757
SRR8749030	Uninduced	2.274
SRR8749031	Uninduced	1.280
SRR8749032	Uninduced	1.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.723
SRR8400027	Control - Root	16.065