Gene detail

Gene detail information of Glyur000024s00006633

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G42130.4	4.00E-101	Plastid-lipid associated protein PAP / fibrillin family protein
NR	XP_004497895.1	5.85E-165	PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q8S9M1\|PAP13_ARATH	2.00E-126	Probable plastid-lipid-associated protein 13, chloroplastic (Precursor)
trEMBL	tr\|I3SSW0\|I3SSW0_MEDTR	2.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:AFK43352.1}

Sequence

Transcript Sequence

>Glyur000024s00006633.1
TGGGGTTAGGACAAGGCGAGAAGCTCTAGGTTGGGATTAGGAAATAGGTAGTGAAACTGAAAAATTGTGTGAACAGCAAAAATAAAAAAAACAGGTACACCACCAGCCACCAGGACCCAGGTCGACAAGTGCTTCGCTTCATGCGGAGAACTCGTGACAAATTGAACTGAACTACTTCTACTTCCATTGTCATTCATTTTCCCCCTTTCTTAGTTTCTTCATCGAAACACAAATATCTGTTAATCAATCAATGGCTGCTTCTGCTTCTATCTCTGCAATCGCCACTTGCATCCCTTCTTCTTCTACCTCTACTTGTCGGAGAGTCTCAGCCTCACGCACCGCGTGGCGGAGGCGTGGGTGTTGCAGAGCCATGGTTCAGACCGGTGCACCCGCCGCTTACGCCAAGGAAATGGAGCGCCTCTCCGCCAAGGAATCCCTTCTCCTCGCTTTTAAAGATGCAGGGGGTTTTGAGGCCTTGGTCTCTGGGAAGACAACTGAGTATCAAAGAATCGATGTGAATGAGAGGATAACTGGTCTTGAGCGGCTCAATCCAACACCTCGCCCCACCACGTCACCCTTTTTGGAAGGGAGATGGAACTTTGAGTGGTTTGGTCCCGGAAGTCCTGGGTTGTATTTTCCTTCAAGTTTTGCTAATTTGTCAAAAATGGATGTCTTTATCAAGGATGGAAATGCAAAGATTACTGCAAACACAACATTGTTAAACTCGATAGAAAGCAAAATTATTGTCTCAACCAAGTTATCTGTGGAGGGGCCACTTAGAATGAAAGAGGAGTATGTTGAAGGGGTTCTTGTATCACCAACAGTTATTGAAGACAGAGTACCACAACAGCTTAAAGGTGCACTTGGGCAGGCAGTTAATGCTTTACAACAACTTCCTGTACCTATACGTGATGCTGTTGCCAATGGGCTAAAAGTTCCTCTAAGTGGAAGCTTTCAGAGACTCTTCATGATTTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACATCTGGGATGCCAGAAGTTTTAACGAGACTGGATGCATCACCATCTTCCTTGGGAGAATCAAGTCCAGAGTATGAAAGCTAGGAATTCTATAAATGGGAAGTGAAATTTTTTTCCTCCTTACTCATGGTGTTAACTCAAATTCCTGTTCTTCCTCCCAAGCCCCTATGTGCCCATGAACAGCTTCTATTTCTTTCTCACTGAAAACTCTTCTTGGTTCTTCTATAGAGGATAAAGTGTGAATATAGAAATATCAATTTGAAGCTGACACCAATTCTCACAAAACCACGTATTTCATGCTTTAGTTTCACAACAAAGTGGTTCTCTGATGTAGGATTTTTTTTTTGGATAGCCAAATATTAGTAAATTAATATGTTATGTTAGTGGGAGAGGTTTGAACCATGACCTCTTTATTACTNCAACCCCTATGTCCCTCCCCCAAATCACTAAACCACCTTTTAACTCCCCCTCGGGTGTAGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	375845	381571	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006633.1	PF04755.7	PAP_fibrillin	81	259	6.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.288
SRR1783600	control	5.339
SRR1783602	moderate drought stress	4.042
SRR1811619	moderate drought stress	3.960

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.386
DRR006520	Root Summer glycyrrhizin high producing strain	3.254
DRR006521	Root Winter glycyrrhizin high producing strain	3.973
DRR006522	Root Winter glycyrrhizin high producing strain	3.991
DRR006523	Root Summer glycyrrhizin low producing strain	4.907
DRR006524	Root Summer glycyrrhizin low producing strain	5.004
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.349
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.246

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.719
SRR2868004	Drought Stress (root)	9.877
SRR2967015	Control (root)	8.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.968
SRR9715740	Leaf	58.264
SRR9715741	Leaf	41.577
SRR9715739	Root	4.281
SRR9715742	Root	3.455
SRR9715743	Root	4.462

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.824
SRR8749028	MeJA induced 9h	5.491
SRR8749029	MeJA induced 9h	5.434
SRR8749030	Uninduced	2.254
SRR8749031	Uninduced	1.325
SRR8749032	Uninduced	1.487

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.762
SRR8400027	Control - Root	13.723