Gene detail information of Glyur000024s00006629 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09810.1 | 0 | actin 7 |
| NR | ACK87035.1 | 0 | actin [Caragana korshinskii] |
| COG | YP_003266114.1 | 5.00E-94 | actin/actin family protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|O81221|ACT_GOSHI | 0 | Actin |
| trEMBL | tr|B8Y622|B8Y622_9FABA | 0 | Actin {ECO:0000313|EMBL:ACK87035.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 355109 | 357966 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006629.1 | PF00022.14 | Actin | 5 | 377 | 5.70E-157 |
| Glyur000024s00006629.2 | PF00022.14 | Actin | 5 | 377 | 5.70E-157 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 82.728 |
| SRR1783600 | control | 82.770 |
| SRR1783602 | moderate drought stress | 30.036 |
| SRR1811619 | moderate drought stress | 29.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.364 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.498 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.297 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.793 |
| SRR2868004 | Drought Stress (root) | 38.867 |
| SRR2967015 | Control (root) | 37.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 41.721 |
| SRR9715740 | Leaf | 37.996 |
| SRR9715741 | Leaf | 40.607 |
| SRR9715739 | Root | 32.168 |
| SRR9715742 | Root | 29.324 |
| SRR9715743 | Root | 30.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.238 |
| SRR8749028 | MeJA induced 9h | 29.877 |
| SRR8749029 | MeJA induced 9h | 22.449 |
| SRR8749030 | Uninduced | 7.373 |
| SRR8749031 | Uninduced | 3.781 |
| SRR8749032 | Uninduced | 7.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.981 |
| SRR8400027 | Control - Root | 84.969 |