Gene detail information of Glyur000024s00006627.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52840.1 | 2.00E-11 | beta-galactosidase 2 |
| NR | XP_006587007.1 | 8.93E-21 | PREDICTED: beta-galactosidase-like [Glycine max] |
| Swissprot | tr|P48981|BGAL_MALDO | 1.00E-15 | Beta-galactosidase (Precursor) |
| trEMBL | tr|I1L1H0|I1L1H0_SOYBN | 3.00E-21 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 349403 | 350618 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006627.1 | PF01301.14 | Glyco_hydro_35 | 33 | 56 | 6.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.125 |
| SRR1783600 | control | 3.946 |
| SRR1783602 | moderate drought stress | 5.928 |
| SRR1811619 | moderate drought stress | 5.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.592 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.758 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.211 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.918 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.396 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.555 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.268 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.373 |
| SRR2868004 | Drought Stress (root) | 7.234 |
| SRR2967015 | Control (root) | 7.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.013 |
| SRR9715740 | Leaf | 1.474 |
| SRR9715741 | Leaf | 3.730 |
| SRR9715739 | Root | 0.086 |
| SRR9715742 | Root | 1.089 |
| SRR9715743 | Root | 0.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.293 |
| SRR8749028 | MeJA induced 9h | 11.341 |
| SRR8749029 | MeJA induced 9h | 3.172 |
| SRR8749030 | Uninduced | 5.759 |
| SRR8749031 | Uninduced | 5.488 |
| SRR8749032 | Uninduced | 3.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.846 |
| SRR8400027 | Control - Root | 9.580 |