Gene detail

Gene detail information of Glyur000024s00006621.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06740.1	3.00E-162	Concanavalin A-like lectin protein kinase family protein
NR	XP_007145695.1	0	hypothetical protein PHAVU_007G260500g [Phaseolus vulgaris]
COG	YP_002763346.1	1.00E-24	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	0	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|V7BID6\|V7BID6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW17689.1}

Sequence

Transcript Sequence

>Glyur000024s00006621.1
ATGAAAGCCTCATTCAATTCAACTTTTGTTTTCGACNTTCATCCTGTAACCTCTCCTGGTGGTGAGGGATTGGCTTTCATTATAGCAGCCAACACCACTCTCCCAAATAACAGTGCAGGGCAATGGCTTGGGATTGTTAACTCAACAAGCATAGGGGTAGTTAACATAGTTGCTGTGGAGTTTGACACAAAAAAGAGCTACCCTGAAGATTCTGATGATAACCATGTTGGGGTGGATGTGAAAAGCATCTACTCCATCATGCAACAACCCCTAGGAGCATATGGTGTGATTGGTGTCAATCTTTCTAGTGGCAATGATGTTATTGCCACAGTTCACTTTGATGCCAAAGCTGGAAAAATGTCCATTTTTGTTTCTACACCGGGAGACTTGAAGAAGTTGAAGACAGCAGTGCTTATAGTGGATCTTGATCTCTCTAAACTTCTCCCAGAAGATGTTTTTGTGGGGTTTTCAGCTTCCACTGGGGTATATACCCAGGTTAACACAATAAGGTCATGGCATTTCTCAAGCTGGGAGTATATTGAGGGGAATCCAATCAACCTAATATGGCTATGGATCTTGATTCCAATAATTGTGGTTGGAGGGGCATGTGGGGTTGCTGGTGTATATTATTGGAAAAGGATACACAGAAAGGAACCAAGGCTGGAGGAAGATCTACAGATAGAGCTTGAGATTAAAAACTCATCTAATGCTCCACATAGGTTTCAGCTGAAGGAGCTTCTATCTGCCACCANGAATTTCAACTCATCAAACAAGCTTGGGAAAGGAGGATTTGGGACAGTTTATAAGGGAACCTTAGATGGCAAGGATGTTGCTGTGAAAAGGATTTCGAAGGATTCGCGCCATGGGAAGCAAGACTTCATAGCAGAAATCACAACCATAGGCAATCTCAATCACAAGAACCTGGTGAAACTTATAGGATGGTGCTATGAGAAGGGTGAGCTCCTTCTTGTGTATGAGTTCATGCCAAATGGGAGCTTAGACAGATTCATTTTCTCTGGAGGAGAGGCCACATCTATAGGGGACTCAACTTTGAGTTGGGAAAAGAGGCATAGTGTTATNTGTGGTGTTTCCCATGCACTTGATTATCTTCACAATGGCTGTGACAAGAGAGTGCTACATAGAGACATAAAACCCAGCAATGTTATGTTGGATTCAGATTTCAATGCTAAACTTGGGGATTTCNGCTTAGCTCGTACCATTCATCTCAGTGAAAAGACTCACCACTCAACAAGAGAGATTGCTGGGACACCGGGATATATGGCACCAGAAAGCTTCCACACTCGAAGGGCTTCGNTTGAGACCGATGTCTATGCATTTGGTGTTCTGATGCTGGAAGTTGTCTGTGGAAGAAGAAAGCCAGGACACAAACAACAGGATCTGAATAGTAACTATAGCAACAACATTGTTGAATGGGTTTGGGAGCTTCATGGTGAAGAAAAGGAAAGCATAACTGATGCTGTTGATTTGAGACTGGATGGTGATTTTGATAAGGTTCAAGCAAGGTGTGTGCTTGAGTTGGGGTTAGCATGCTGCCATCCTAACCCATATGAGAGGCCATCCATGAGAACTGTCTTGAGGGTGCTAATAGGGGAAGCAGCTCCACCATTTGTACCAGTTGAGAAACCTGCTTTCACATGGCCAGCCACAGCTCCTGTTCTAAGAGAAGATTTAAATTCCCANACTACCGGATCCCAAAATGAACCTATAACAGAACTGGAGGGAGACAAGGCGGCGCCAGGGCCACAGGGAAACTCAACCCCGCCCACTGCTGTTGGTGGGAAGGGTGCTGACTCAGCAGGGGTAGCAGGTGCGGAACCTACGGCGGCTGTGAAGGAACCTATTCACGGTGATTGGCTAATTGTCAAACGTAAAAAAGGCAAGAATCATGGGACAAATCAGGTTAAAAACGGTACTGATTCTAAGGGGAAAATAATCATGGGAAATAATGGCAAGAAAGAGCCATTTTCCGCGAATGGTGGGACGTCGGGTTTGCGTGCTAATATTGCGCAACGTACATCCCAGGGGGGTAACTCAACACGTGCTCAACACACTCCCTTCAAGTCGACCCACAAGCGACTGAGGCAAGACTCTAATTCGTCTTCTGTGAAAGAGCACAACAAGCCCAAAGTGGACAAACCCAAGGTTGACAAGTCCAAGGGGAGTAATACTAATGAGCACAAAGCCAATAAGGGACCAATAATTTTTAATATTGGCAATGGCGCTAAGTCCACCATTAATATGAAAGAGGTGGGCCCCAACCAATTTATTATGTTGCATGATGATCACAATGACACACCTCCTGACGCCATGCATGAGGATGTGGTGCAAGACACTCCAAACGGTGATGAAGAAAAAGTCTTAGAGACACAAATACATGATGATGCTATGGCTATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	316646	323829	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006621.1	PF00139.14	Lectin_legB	3	175	7.60E-43
Glyur000024s00006621.1	PF00069.20	Pkinase	255	532	6.80E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.205
SRR1783600	control	2.263
SRR1783602	moderate drought stress	2.211
SRR1811619	moderate drought stress	2.224

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.084
DRR006520	Root Summer glycyrrhizin high producing strain	2.043
DRR006521	Root Winter glycyrrhizin high producing strain	0.841
DRR006522	Root Winter glycyrrhizin high producing strain	0.856
DRR006523	Root Summer glycyrrhizin low producing strain	1.421
DRR006524	Root Summer glycyrrhizin low producing strain	1.436
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.538
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.519

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.917
SRR2868004	Drought Stress (root)	7.255
SRR2967015	Control (root)	6.140

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.374
SRR9715740	Leaf	0.279
SRR9715741	Leaf	0.471
SRR9715739	Root	0.427
SRR9715742	Root	1.337
SRR9715743	Root	1.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.843
SRR8749028	MeJA induced 9h	4.083
SRR8749029	MeJA induced 9h	2.659
SRR8749030	Uninduced	8.369
SRR8749031	Uninduced	6.283
SRR8749032	Uninduced	4.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.205
SRR8400027	Control - Root	2.816