Gene detail

Gene detail information of Glyur000024s00006613.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06710.1	6.00E-60	homeobox from Arabidopsis thaliana
NR	XP_003533912.1	1.39E-162	PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max]
Swissprot	tr\|P46665\|HAT14_ARATH	2.00E-91	Homeobox-leucine zipper protein HAT14
trEMBL	tr\|I1L2K9\|I1L2K9_SOYBN	5.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G16790.1}

Sequence

Transcript Sequence

>Glyur000024s00006613.1
CTTTACTCCCACCACAAAGGCAAAGGAAAAGAGCACAAATAAAAAGGCATTCCCATTCCTGTTTTTGGTGTTAACGAGTCTGGGAGAATTGAAGGAGCAAGTTTGTTTCACCACACACAGCTACCGAATGCGCTGTCTCCTAGCTTCCTTGTTCTCTCCACTGAAGAAATTAAAAGGAGCTATATAACACACACACCCCTTTTGCTTGCAACAAAATAAGCGTAGACATTGCACTACCTTCAAATTAGTCCTTCCTTTGTGGGTTGAAGCTTTGAACACACACACACACACACACACAAAGACATATATATATATATATATGGAGCTGGCTTTGAGCTTAGGAGACACTCCAAAACCCTTTTCTTTTCTTGACAAGCCCACAAATCTAGCCTCCAAAGACCCACCAGGCTTCTGCATAACACGAGGGAAAACCTCAGAGGAAAAAAGAGTCGATGATGATGATAAAAGAAGGGATTCCATTTCCTCGGATCCACCCATTCAGCTTGACCTTCTTCCCTTCACTCCCGTTCTTAGATCCCAGCACCCTTCNTCTCACCTTCGAATCCCTTGGCTCACCCAACCATGTGGACCGGCGAGGGTGCTGGACGTGAACCGTTTTCCGGTGGCTGCTTCTGCGGCGGCGGAGGACGCCGACGATGNAACCTCACTGTCGTCCCCGAACAGCGCGGTGTCACCATTTCAAATGGATTTCGGCATGAGGAACGGTAATGCAGCAGAGTATGGTGGAGCTGTCAGAAACAAGAGAGATAACGAGGGTACTGAGGCCGAAAGAGCGAGTGACGACGACGAGAACGGGTCGACTCGGAAGAAACTCAGACTCTCCAAGGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACAACTCTCAATCCCAAGCAGAAACTTGCACTGGCAAAACAGTTGAATCTTCGTCCTCGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGACTGTGAGTATTTGAAGAGATGCTGTGAGACACTGACAGAGGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCGTTGAAAACGTCACAGCCATTCTACATGCAGCTTCCAGCTACCACTCTCACCATGTGTCCNTCTTGTGAACGGGTCGCTACCAACAACTCCTCCTGCACCGCAACCGGAACCAACAACACCAACGGTTTCCAAGTCCCAGGCCCAGCTGTTGAGTTGTCTCTTAGCAAGCCCAGAATATTACCATTTTCTAATGGCCAGGCCCAAGCCCATCAGATGGCTTCATGATCCCATCCCCATCATCTCATGGACACTTTTTTTTTGCTTTCTTTCTTTTTTTGGTCTTTCACATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	251711	253661	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006613.1	PF00046.24	Homeobox	169	223	4.60E-15
Glyur000024s00006613.1	PF02183.13	HALZ	225	267	3.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.756
SRR1783600	control	1.686
SRR1783602	moderate drought stress	3.188
SRR1811619	moderate drought stress	3.397

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.674
DRR006520	Root Summer glycyrrhizin high producing strain	5.594
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.616
DRR006524	Root Summer glycyrrhizin low producing strain	2.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.603

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.526
SRR2868004	Drought Stress (root)	6.577
SRR2967015	Control (root)	7.238

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.397
SRR9715740	Leaf	0.515
SRR9715741	Leaf	1.330
SRR9715739	Root	0.463
SRR9715742	Root	1.242
SRR9715743	Root	1.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.896
SRR8749028	MeJA induced 9h	2.715
SRR8749029	MeJA induced 9h	1.322
SRR8749030	Uninduced	6.722
SRR8749031	Uninduced	6.258
SRR8749032	Uninduced	3.911

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.460
SRR8400027	Control - Root	3.611