Gene detail information of Glyur000024s00006598 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20230.1 | 3.00E-17 | blue-copper-binding protein |
| NR | XP_004507625.1 | 4.55E-58 | PREDICTED: early nodulin-like protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q07488|BCB1_ARATH | 4.00E-22 | Blue copper protein (Precursor) |
| trEMBL | tr|I1KDE7|I1KDE7_SOYBN | 2.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G28650.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 172138 | 173358 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006598.1 | PF02298.12 | Cu_bind_like | 56 | 136 | 1.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.995 |
| SRR1783600 | control | 8.836 |
| SRR1783602 | moderate drought stress | 5.062 |
| SRR1811619 | moderate drought stress | 5.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 198.073 |
| SRR2868004 | Drought Stress (root) | 490.806 |
| SRR2967015 | Control (root) | 446.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 96.004 |
| SRR9715740 | Leaf | 176.291 |
| SRR9715741 | Leaf | 118.343 |
| SRR9715739 | Root | 8.997 |
| SRR9715742 | Root | 8.704 |
| SRR9715743 | Root | 11.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.503 |
| SRR8749028 | MeJA induced 9h | 31.940 |
| SRR8749029 | MeJA induced 9h | 8.927 |
| SRR8749030 | Uninduced | 318.797 |
| SRR8749031 | Uninduced | 120.031 |
| SRR8749032 | Uninduced | 28.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 67.160 |
| SRR8400027 | Control - Root | 61.293 |