Gene detail

Gene detail information of Glyur000024s00006595.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25390.1	1.00E-105	Protein kinase superfamily protein
NR	XP_003614548.1	0	Tyrosine-protein kinase ABL [Medicago truncatula]
COG	YP_003640725.1	1.00E-19	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	8.00E-124	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|G7JZG1\|G7JZG1_MEDTR	0	Wall-associated kinase family protein {ECO:0000313\|EMBL:AES97506.1}

Sequence

Transcript Sequence

>Glyur000024s00006595.1
ATGGCTGCCCAATTTGTGTTTCCTTTCCTTTCCTTATTCTTTTATTTTCTGCTTCTTCTCTCTGCTGCAGTTGAAGACGGAAAAGACCGTACAGAAGAATGTGAAGTAATTCCTCGTCAGTGTGGGTATGTTGGGGAAATCTCCTTCCCCTTCACAACCGTGAATGACCCAAAATGTGGCTTTTACGTACGAGGTTGTGACAACGAAACTGCAGAGAAAGAAATCGAACTGGTGGAAAACCAATTCTACAAAATTGATAGCATCCAGAAGCAGGACAATCAAATTTTCATCTATGGCAACAGTACCGATGAAAGTGAAATTGATTCAGTGCCTCACGATCATATTAGCCTTGACAAAATTTCCTTCCATGGATGCAGCCATAACTCTACCTGTGAAAACATGTGGAAATATAGAAACTGCCCTGACCATGACTATGACATCTACTTTACTTCTGAACCTGACCATCGACCCATGTTTCCCATTTTTCCAATTCCATGTTCACCACCGGTTCAGTTTCCAGAAGGGCTAGCAGCATCCGATCCCCCTGACCATTGTAGACTTTTATTTTCTATACTCCAAATTAGAGTAGAATTAGATAGGTATTGTGAATACTGTCACGAAGGAAACCCGTGTCTACTAAAGCATGATCATTTCACTTGTGTCCCTAGCCGTGTTTGCATTGCCGTTTGCGATGGAAATTTCACTAATTCTGAGCAAGGCAAACAAATAGGCAATGCCCGGCCTAAGGGTTTATCTATTGTATTGGTAACCGTGATTACAATTGCCTTGTTAGTTATTATTCTTGTGCTGTACAATCGAAGAATCAAATCATCAGGTGTCGAAAACCAGTCAAGAAGCACTTTTCGTGCTCTCACTAGAAATACAACAATCCCAGAAAGTGGAGCTGTCTATTTTGGGATCCCTGTCTTTTCCTATGAGGAGCTTCAAGAGGCAACCAACAATTTTGATCAAGCCAGAGAGCTGGGAGAAGGAGGATTTGGGACTGTCTACTATGGAAAACTTCAAGATGGACGTGAAGTTGCAGTAAAGCGCCTATTCGAGCGCAATTACAGGCCAGTGGAACAGTTCACCAATGAAATTCAGATCCTCACACGCATGCGCCACATAAATCTTGTGTCCCTTTATGGCTGCACTTCACGCCACAGCCGTGAGTTGCTGCTAGTATACGAATACGTCCCAAATGGCACTGTTAGTTGCCATCTCCATGGTGATAAGACAAAGAAACATGGTTCATTGCCCTGGCATGTGAGAATGAAAATTGCCATAGAGACTGCTAGTGCATTGACATATCTCCATGCTTCTGACATCATTCACCGAGACGTCAAATCCAGCAACATTCTCCTTGACAACAACTTTTGTGTTAAAGTTGCAGATTTTGGGCTTTCAAGATTGTTCCCCAATGATGTCACACACGTGTCCACAGCTCCAAAGGGAACACCAGTTGTACTTGTTGAGCTAATATCGTCTTTGCCAGCAGTTGACTTGACCAGGGAAAGGGATGATATTCAGTTGGCAAATCTAGCCAGAAGGAAGATTCAAAGAAGGGAATTTTGTGAGCTGGTTGATCCTTCCCTTGGTTTCCAATCAGATGATGGGTTGAAGAGGATGATCATTTCNGTGGCGGAATTGGCNTTNCATTGTTTGCAAGGGGACAAGGAATTGAGACCCTCTATGAGTGAGGTATTGGAGGTGCTGCAGAGAATNGGAAATTGGAAGGATGAGCCTGCTGGGAATATTGATCTTGAGAGCANTAATGTTAATGGTGCCAGGGTTGCACAAAGTTATGTACACCCATCACTTCCGAACACTTGGATGGAGCTACAGCGCCATCATCAAACACTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	140111	144174	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006595.1	PF00069.20	Pkinase	324	486	2.90E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.559
SRR1783600	control	0.587
SRR1783602	moderate drought stress	0.094
SRR1811619	moderate drought stress	0.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.545
DRR006520	Root Summer glycyrrhizin high producing strain	0.633
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.435
DRR006524	Root Summer glycyrrhizin low producing strain	0.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.097
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.790

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.039
SRR2868004	Drought Stress (root)	0.848
SRR2967015	Control (root)	0.722

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.726
SRR9715740	Leaf	35.721
SRR9715741	Leaf	20.026
SRR9715739	Root	0.337
SRR9715742	Root	1.532
SRR9715743	Root	0.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.076
SRR8749028	MeJA induced 9h	0.068
SRR8749029	MeJA induced 9h	0.172
SRR8749030	Uninduced	0.068
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.317
SRR8400027	Control - Root	0.643