Gene detail

Gene detail information of Glyur000024s00006586.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16060.1	1.00E-74	ARIA-interacting double AP2 domain protein
NR	KEH38069.1	0	AP2-type transcription factor [Medicago truncatula]
Swissprot	tr\|Q94AN4\|AP2L1_ARATH	1.00E-103	AP2-like ethylene-responsive transcription factor At1g16060
trEMBL	tr\|A0A072V7P1\|A0A072V7P1_MEDTR	0	AP2-type transcription factor {ECO:0000313\|EMBL:KEH38069.1}

Sequence

Transcript Sequence

>Glyur000024s00006586.1
ATGGCTAAACTATCCCAGCAACAAATCCAGAAAAACAATGCAAGAAATAACAACAACCTTAATGTGACTAACACGGTGATCACTACACCAAAAACACGGAGCGATAACGGAAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACTTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCATCGATGGACAGGGCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGGTGCTTATGACGNTGAAGAGGCGGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCCGTTATCGACCTACGAGACTCAATTGAAACAAATGGAGGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTCTCTCGCGGAGTTTCTAAATACAGGGGTGTTGCAAGACACCATCATAATGGAAGGTGGGAGGCCCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTATGCTACCCAAGAAGAAGCTGCCACAGCATACGATATGGCAGCTATTGAATATAGAGGACTCAATGCGGTCACCAATTTTGACCTCAGCCGTTATATCAAGTGGCTCAAGCCTAATCACAACAACATTGATAGTGACAAAATTATTAGCTCCAAAAACATTGACTCTAACCCAATTTGTAACACCAATTTCATCCCAAACCCTAGTCAAGAAGAACAAGGACTCAGCTTCTTCCACATGACTCAAGAGTCATCATTAATGAACAATATTGGAGAAGGAGCTGATGCACCAATAGCACAACATCCAAGGCCAGCTTCTGCCACGTCAGCCCTAGGGCTTTTGCTTCAATCATCAAAGTTTAAGGAGATGATGGAGATGACAAGTGCTGCTGACTTGTCCACACCACCGGATGAGTGTGAGTTGCTGCCAGTACCATGCCCATTTCCTGAAGACATTCAGACATACTTTGAGTGTGAAGATGATTCAAGCATAAGCAAATATGGTGGAGAAGGGGATAATGATATCATGTTCAATGAGTTTAACTCTTTTGTTCCCCCTATGTTCCACTGTGATGACTTTGTTGATCAGGGCTTGAAGGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00024	79101	81819	+

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000024s00006586.1	PF00847.15	AP2	56	112	8.50E-10
Glyur000024s00006586.1	PF00847.15	AP2	155	206	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.094
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.079
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.317
SRR2967015	Control (root)	0.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.045
SRR9715740	Leaf	0.054
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.092
SRR8400027	Control - Root	0.315