Gene detail information of Glyur000024s00006580 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30710.1 | 2.00E-69 | Family of unknown function (DUF566) |
| NR | XP_003524032.1 | 0 | PREDICTED: QWRF motif-containing protein 8-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SUH5|QWRF8_ARATH | 6.00E-163 | QWRF motif-containing protein 8 |
| trEMBL | tr|I1JWC1|I1JWC1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G24040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00024 | 8284 | 13238 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000024s00006580.1 | PF04484.7 | DUF566 | 309 | 579 | 7.10E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.578 |
| SRR1783600 | control | 11.747 |
| SRR1783602 | moderate drought stress | 7.352 |
| SRR1811619 | moderate drought stress | 7.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.106 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.434 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.201 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.250 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.983 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.097 |
| SRR2868004 | Drought Stress (root) | 11.669 |
| SRR2967015 | Control (root) | 10.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.596 |
| SRR9715740 | Leaf | 5.800 |
| SRR9715741 | Leaf | 4.958 |
| SRR9715739 | Root | 1.816 |
| SRR9715742 | Root | 4.615 |
| SRR9715743 | Root | 4.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.854 |
| SRR8749028 | MeJA induced 9h | 7.977 |
| SRR8749029 | MeJA induced 9h | 3.591 |
| SRR8749030 | Uninduced | 5.865 |
| SRR8749031 | Uninduced | 2.827 |
| SRR8749032 | Uninduced | 0.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.458 |
| SRR8400027 | Control - Root | 14.734 |