Gene detail information of Glyur000023s00004943 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55820.1 | 3.00E-34 | Fasciclin-like arabinogalactan family protein |
| NR | XP_006595873.1 | 3.23E-112 | PREDICTED: uncharacterized protein LOC100779091 [Glycine max] |
| COG | YP_007056329.1 | 7.00E-07 | secreted/surface protein with fasciclin-like repeats [Rivularia sp. PCC 7116] |
| trEMBL | tr|I1M7X4|I1M7X4_SOYBN | 1.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 546102 | 546701 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004943.1 | PF02469.17 | Fasciclin | 70 | 183 | 1.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.431 |
| SRR1783600 | control | 1.614 |
| SRR1783602 | moderate drought stress | 1.106 |
| SRR1811619 | moderate drought stress | 1.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.286 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.141 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.556 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.365 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.076 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.576 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.081 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.955 |
| SRR2868004 | Drought Stress (root) | 4.038 |
| SRR2967015 | Control (root) | 2.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.172 |
| SRR9715740 | Leaf | 1.320 |
| SRR9715741 | Leaf | 2.342 |
| SRR9715739 | Root | 0.086 |
| SRR9715742 | Root | 2.405 |
| SRR9715743 | Root | 1.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.548 |
| SRR8749028 | MeJA induced 9h | 1.557 |
| SRR8749029 | MeJA induced 9h | 0.827 |
| SRR8749030 | Uninduced | 1.327 |
| SRR8749031 | Uninduced | 0.683 |
| SRR8749032 | Uninduced | 1.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.961 |
| SRR8400027 | Control - Root | 2.841 |