Gene detail

Gene detail information of Glyur000023s00004938

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00430.1	7.00E-144	plasma membrane intrinsic protein 1;4
NR	AAV41024.1	0	plasma membrane intrinsic protein [Glycyrrhiza uralensis]
COG	YP_003392749.1	1.00E-31	MIP family channel protein [Conexibacter woesei DSM 14684]
Swissprot	tr\|P25794\|PIP2_PEA	0	Probable aquaporin PIP-type 7a
trEMBL	tr\|Q5U7L0\|Q5U7L0_GLYUR	0	Plasma membrane intrinsic protein {ECO:0000313\|EMBL:AAV41024.1}

Sequence

Transcript Sequence

>Glyur000023s00004938.1
CTCAATCAAATTCNGATTATAAATCCGCACTCACTCACCCCCCAGTCCCACTGACACAACACGAGAGAGANCGAGGAAACATCGTGAAGGAGAAGAAACATAGTAAGACATGGAAGGGAAGGAACAGGATGTGTCGTTGGGAGCGAACAAGTTCCCGGAGAGACAGCCGCTAGGGACGGCGGCTCAGAGCCAAGACGAGACGAAGGACTACCAGGAACCACCACCGGCGCCGCTGTTCGAGCCGTCGGAGCTGACATCGTGGTCGTTCTATAGAGCCGGGATAGCGGAATTCATAGCCACTTTCCTCTTCCTCTACATCACCGTCTTGACAGTTATGGGAGTCAGCAGGGAANGCTCCAAGTGCAAAACCGTCGGTATTCAAGGAATCGCTTGGGCTTTTGGTGGCATGATCTTCGCCCTCGTTTACTGTACCGCTGGCATCTCAGGGGGGCACATAAACCCGGCGGTGACGTTTGGATTGTTCTTGGCGAGGAAGTTGTCGTTGACAAGGGCGGTGTTCTACATGGTGATGCAGTGTCTTGGAGCTATCTGTGGAGCTGGCGTGGTGAAAGGTTTCGAGGGGAAAACCAGATACGGTGCCCTCAATGGTGGTGCCAACTTTGTCAACCCTGGTTACACCAAAGGTGACGGACTCGGTGCTGAGATTGTTGGCACCTTCATTCTTGTCTACACCGTCTTCTCTGCCACCGATGCCAAACGCAGCGCCAGAGACTCTCACGTCCCTATTTTGGCACCCTTGCCTATTGGGTTCGCTGTGTTCTTGGTCCACTTGGCCACCATCCCCATCACCGGAACTGGTATCAACCCTGCTCGTAGTCTTGGTGCTGCTATCATCTTCAACAAGGACCGTGGTTGGAATGATCACTGGATCTTCTGGGTGGGACCATTCATTGGAGCAGGTCTTGCAGCTCTCTACCACGTAGTCGTAATCCGTGCCATTCCCTTCAAGTCGAAGTGATGATGATCATTGAATCAAACGGTTCGTGGTTATCAATCAAGTTGTGGGGAACAACCAAGTCCAAAAATCAAGCCATGTTTGTGGGTTCCATTTCATCATCATCATCATCATCATGATCTGTTTATCTTCTTTTTTTANTTTTAAAGTATTGTAATTTGTAATTTTGTATGTAAATTAAAGATCGTGTAATATGGTNATTATATTATTACTAGGGGGTTGCACTTGCATGTGTTGGCGTCATGGGCCATTCCACTGCTTTTAAGTTGGAAGGAGGGCCCAGCTCGTGTGTNATGTACGGCTGTGATTGTGTATTTTGCCAAATCAAAAATAACACCCGATCGAGTCATTTCTGGATCTTTCTTTTTTCTAATTCTTTTTTGTTATCTTTCTCTCTCCCTCGACCTCATTATGTCCTCACTGTAATATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	523536	525582	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004938.1	PF00230.15	MIP	47	277	1.30E-83

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	278.092
SRR1783600	control	276.978
SRR1783602	moderate drought stress	593.565
SRR1811619	moderate drought stress	587.275

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	230.335
DRR006520	Root Summer glycyrrhizin high producing strain	229.185
DRR006521	Root Winter glycyrrhizin high producing strain	444.035
DRR006522	Root Winter glycyrrhizin high producing strain	431.524
DRR006523	Root Summer glycyrrhizin low producing strain	445.523
DRR006524	Root Summer glycyrrhizin low producing strain	440.892
DRR006525	Leaf Summer glycyrrhizin high producing strain	86.660
DRR006526	Leaf Summer glycyrrhizin high producing strain	87.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4825.343
SRR2868004	Drought Stress (root)	6190.908
SRR2967015	Control (root)	4945.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	721.758
SRR9715740	Leaf	634.480
SRR9715741	Leaf	1057.651
SRR9715739	Root	1459.309
SRR9715742	Root	1113.962
SRR9715743	Root	1143.672

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	544.339
SRR8749028	MeJA induced 9h	1345.812
SRR8749029	MeJA induced 9h	1056.160
SRR8749030	Uninduced	626.723
SRR8749031	Uninduced	816.791
SRR8749032	Uninduced	1132.401

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1437.103
SRR8400027	Control - Root	938.012