Gene detail information of Glyur000023s00004934 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40000.1 | 4.00E-138 | ortholog of sugar beet HS1 PRO-1 2 |
| NR | XP_003545237.2 | 0 | PREDICTED: nematode resistance protein-like HSPRO2-like [Glycine max] |
| Swissprot | tr|O04203|HSPR2_ARATH | 2.00E-171 | Nematode resistance protein-like HSPRO2 |
| trEMBL | tr|I1M7W2|I1M7W2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G06640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 495146 | 496516 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004934.1 | PF07231.7 | Hs1pro-1_N | 1 | 192 | 6.40E-79 |
| Glyur000023s00004934.1 | PF07014.7 | Hs1pro-1_C | 195 | 447 | 2.30E-118 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.814 |
| SRR1783600 | control | 7.716 |
| SRR1783602 | moderate drought stress | 16.497 |
| SRR1811619 | moderate drought stress | 16.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 91.968 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.333 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.877 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.950 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 169.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 169.234 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 355.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 354.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.366 |
| SRR2868004 | Drought Stress (root) | 237.387 |
| SRR2967015 | Control (root) | 765.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1230.000 |
| SRR9715740 | Leaf | 1371.575 |
| SRR9715741 | Leaf | 1383.547 |
| SRR9715739 | Root | 538.460 |
| SRR9715742 | Root | 598.463 |
| SRR9715743 | Root | 564.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1025.866 |
| SRR8749028 | MeJA induced 9h | 1259.306 |
| SRR8749029 | MeJA induced 9h | 1052.975 |
| SRR8749030 | Uninduced | 481.004 |
| SRR8749031 | Uninduced | 627.479 |
| SRR8749032 | Uninduced | 889.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.144 |
| SRR8400027 | Control - Root | 92.416 |