Gene detail information of Glyur000023s00004932 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40010.1 | 6.00E-25 | Ribosomal protein L10 family protein |
| NR | XP_003621750.1 | 8.39E-102 | 60S acidic ribosomal protein P0 [Medicago truncatula] |
| Swissprot | tr|P50346|RLA0_SOYBN | 3.00E-29 | 60S acidic ribosomal protein P0 |
| trEMBL | tr|G7KUS1|G7KUS1_MEDTR | 3.00E-102 | Ribosomal protein L10 family protein {ECO:0000313|EMBL:AES77968.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 465850 | 467950 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004932.1 | PF00466.15 | Ribosomal_L10 | 6 | 86 | 7.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.320 |
| SRR1783600 | control | 13.487 |
| SRR1783602 | moderate drought stress | 16.308 |
| SRR1811619 | moderate drought stress | 16.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.276 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.042 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.681 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.973 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.381 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.616 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.046 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.487 |
| SRR2868004 | Drought Stress (root) | 7.647 |
| SRR2967015 | Control (root) | 7.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.051 |
| SRR9715740 | Leaf | 3.718 |
| SRR9715741 | Leaf | 2.828 |
| SRR9715739 | Root | 8.219 |
| SRR9715742 | Root | 6.432 |
| SRR9715743 | Root | 6.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.578 |
| SRR8749028 | MeJA induced 9h | 16.950 |
| SRR8749029 | MeJA induced 9h | 25.468 |
| SRR8749030 | Uninduced | 4.388 |
| SRR8749031 | Uninduced | 2.842 |
| SRR8749032 | Uninduced | 7.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.225 |
| SRR8400027 | Control - Root | 16.534 |