Gene detail information of Glyur000023s00004928 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05740.3 | 5.00E-179 | ethylene-dependent gravitropism-deficient and yellow-green-like 2 |
| NR | KHN48555.1 | 0 | hypothetical protein glysoja_034178 [Glycine soja] |
| COG | YP_003885663.1 | 6.00E-73 | peptidase M50 [Cyanothece sp. PCC 7822] |
| Swissprot | tr|Q9FFK3|EGY2_ARATH | 0 | Probable zinc metalloprotease EGY2, chloroplastic (Precursor) |
| trEMBL | tr|I1JI75|I1JI75_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G42300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 429194 | 435573 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004928.1 | PF02163.17 | Peptidase_M50 | 283 | 448 | 3.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.542 |
| SRR1783600 | control | 7.476 |
| SRR1783602 | moderate drought stress | 7.150 |
| SRR1811619 | moderate drought stress | 7.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.646 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.960 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.182 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 77.217 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 76.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.440 |
| SRR2868004 | Drought Stress (root) | 9.663 |
| SRR2967015 | Control (root) | 12.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 45.737 |
| SRR9715740 | Leaf | 71.958 |
| SRR9715741 | Leaf | 42.050 |
| SRR9715739 | Root | 2.504 |
| SRR9715742 | Root | 4.134 |
| SRR9715743 | Root | 3.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.264 |
| SRR8749028 | MeJA induced 9h | 15.398 |
| SRR8749029 | MeJA induced 9h | 23.980 |
| SRR8749030 | Uninduced | 13.036 |
| SRR8749031 | Uninduced | 11.235 |
| SRR8749032 | Uninduced | 15.688 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.506 |
| SRR8400027 | Control - Root | 11.933 |