Gene detail information of Glyur000023s00004923.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47570.1 | 0 | Leucine-rich repeat protein kinase family protein |
| NR | XP_003616620.1 | 0 | Receptor-like protein kinase [Medicago truncatula] |
| COG | YP_004775215.1 | 2.00E-54 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|C0LGP4|Y3475_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) |
| trEMBL | tr|G7KGZ6|G7KGZ6_MEDTR | 0 | LRR receptor-like kinase family protein {ECO:0000313|EMBL:AES99578.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 366497 | 384398 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004923.1 | PF08263.7 | LRRNT_2 | 40 | 78 | 2.20E-08 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 132 | 191 | 2.70E-07 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 203 | 263 | 3.60E-08 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 476 | 536 | 6.10E-08 |
| Glyur000023s00004923.1 | PF00560.28 | LRR_1 | 573 | 595 | 0.018 |
| Glyur000023s00004923.1 | PF00069.20 | Pkinase | 717 | 947 | 3.80E-38 |
| Glyur000023s00004923.1 | PF08263.7 | LRRNT_2 | 1040 | 1078 | 1.60E-07 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 1132 | 1191 | 1.20E-06 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 1203 | 1263 | 2.90E-07 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 1477 | 1536 | 3.80E-07 |
| Glyur000023s00004923.1 | PF00560.28 | LRR_1 | 1573 | 1595 | 0.079 |
| Glyur000023s00004923.1 | PF00069.20 | Pkinase | 1717 | 1904 | 2.90E-28 |
| Glyur000023s00004923.1 | PF08263.7 | LRRNT_2 | 1976 | 2013 | 7.80E-08 |
| Glyur000023s00004923.1 | PF00560.28 | LRR_1 | 2068 | 2089 | 0.53 |
| Glyur000023s00004923.1 | PF13855.1 | LRR_8 | 2411 | 2471 | 1.90E-07 |
| Glyur000023s00004923.1 | PF00560.28 | LRR_1 | 2508 | 2530 | 0.04 |
| Glyur000023s00004923.1 | PF00069.20 | Pkinase | 2652 | 2868 | 2.50E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.163 |
| SRR1783600 | control | 0.160 |
| SRR1783602 | moderate drought stress | 0.907 |
| SRR1811619 | moderate drought stress | 0.867 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.025 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.891 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.212 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.196 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.322 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.070 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.110 |
| SRR2868004 | Drought Stress (root) | 0.119 |
| SRR2967015 | Control (root) | 0.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.114 |
| SRR9715740 | Leaf | 5.883 |
| SRR9715741 | Leaf | 4.576 |
| SRR9715739 | Root | 1.929 |
| SRR9715742 | Root | 6.719 |
| SRR9715743 | Root | 6.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.137 |
| SRR8749028 | MeJA induced 9h | 0.086 |
| SRR8749029 | MeJA induced 9h | 0.155 |
| SRR8749030 | Uninduced | 0.062 |
| SRR8749031 | Uninduced | 0.080 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.093 |
| SRR8400027 | Control - Root | 0.238 |