Gene detail

Gene detail information of Glyur000023s00004910

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40116.1	1.00E-160	Phosphoinositide-specific phospholipase C family protein
NR	KHN34718.1	0	Phosphoinositide phospholipase C 6 [Glycine soja]
COG	YP_006363103.1	9.00E-07	50S ribosomal protein L7Ae [Thermogladius cellulolyticus 1633]
Swissprot	tr\|Q8GV43\|PLCD6_ARATH	0	Phosphoinositide phospholipase C 6
trEMBL	tr\|P93620\|P93620_VIGUN	0	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}

Sequence

Transcript Sequence

>Glyur000023s00004910.1
ATGGGGAACAACATGGTAACATACAACAAGTACAAAAGTTTCCTGTTCTTTATCAGAAAGTACAGGGTTACTGAGGTGGTTCCGCCTCAGGATCTTAGGGAGGCGTTTTCGAAGTTCGCCAGAGGAGGGTCCTACATGTCAACGGAGCAGCTCCACCGGTTCCTTGTGGATCACCAGGGAGAGGAGAACTTCACCTTATCGGATTCAGAGAAGATTGCTGAGAAGGTTTTGCAACTGAGAAGAAGGCCACCTGATCAGGAAACTGTTGTTGGACACAATTCCTATCTCACTGGGAATCAACTTAGCAGTGATTGCAGTGAAGAGCCAATCATAAAGGCTTTACAACGAGGCGTGCGTGTTATTGAATTGGATTTATGGCCAACTTCCAACAAAGATGATATTAAAGTTGATCATGGATGGACTCTTACCAATCCTGTCTCACCCATCAAATGTTTGGAATCCATAAAGAAATATGGTTTTGTTGCATCTCAGTACCCAGTGATCATAACCATAGAAGACCATCTTACAGCAGAACTTCGAGCTAAATTTGCAGAAATGACAACTCAAATATTTGGAGAAATGCTATATTATCCTCAGGAAGAATGTTTAACAGAATTCCCTTCACCAGAATCATTGAAAAATAAAATTATTATATCAACCAAACCCCCAAAAGAAAGTGGTCGTGATGAGGGAGACACAAGTGCTTGTGATTGTGATCAAAGATCATCATGTCAGGAGAGTTCACCTGATTACAAAAGCATAATAACAATCCATAATAGGAAACTCAAGGGTAGCCTGAAAGATAAATTGAGAATTGATGGTGAACTTAGACGCCTAAGTTGGAGTGAGACAACCTTAGAAAAGGCTTATGAATCTCATGGAACTGACATTATAAGGTTCACACAGAAAAATATCCTCAGGGTATACCCAAGGGCCATGCGTGTCAAATCCACAAATTTCAAGCCACATATTGGGTGGATGTACGGGGCTCAGATGGGGCATGGAAAATCACTCTGGTTGATGCAAGGAATGTTCAGGGCAAATGGAGGATGTGGTTATGTAAAAAAGCCTGAATTTCTAATGTATGACAATGAGTTTGATCCCAGAAGGATACTTCCAGTGAAGAAGACATTAAAGGTAAAAGTATACATGGGACATGGGTGGAACTTAGATTTCAGTCCCACACACTTTGATATGTTCTCTCCGCCAGACTTTTACACAAAGGTCCGTATTGTTGGAATGCCTGCTGATATTGCAAAGAAGAAAACAAAGGTAATCATGGACAACTGGTTTCCTGTTTGGGATGAAGAGTTTGAATTCCCTTTGACTGTTCCAGAGCTTGCTTTGCTTCAAATACAAGTGAAGGACAAAGATCAGGGAAAGGGTGACTTTGCTGGCCAAACGTGTTTGCCTGTGTCAGAGCTTAAACTTGGATTCAGATCAGTCCCTTTATATAACAGAAAAGGAGATAAATTTAAATCTGTAAAGTTGTTATTGAGGCACAGCATCTCCATTGACAAAGAAGGAGAGCTTGTTTTTGTGAAACCAACAAGGAAAATGTCAAGTGATGAAGCTGTTGTTGCAGCTGAGCCTGCCCCAGCCCCCTCAATTCCAGGGGAGCCAATGGACATCATGACTGCCTTACAACTTGTGCTCAGGAAGTCACTGGCATATGGTGGTCTTGCACGGGGCCTTCACGAAGGTGCNAAAGTAATTGAGAAGAATGCAGCGCAGCTCTGTGTTCTAGCAGAAGATTGTGACCAACCCGACTATGTTAAACTCGTCAAGGCCCTTTGTGCAGANCACAATGTTAGCCTGCTGACAGTTCCTGCTGCTAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAGGGAAAAGCTAGGAAGGTGACTGGTTGCTCCTGTGTTGTTGTNAAGGATTTCGGGGAGGAACATGAAGCCTACAANGTTGTTCTGCAGCATGTGAAATCTCAATGAGTTACATGATGCCTACATGTTGCGTGTTTCANTTTTTCATTTTGGGGTTATTCTATCCGAATGAAGTTTGCTTGTAGCTGGAGTATGGTATCTGCCTAGGGGTTTTGACTCTTTAATTTGCCGTTCTTGTTATTGTTACTCTAATTACATACTTCTTTTAGACATGGTGAATCGGTGATATCTCTGCATTGAATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	296029	303871	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05857	PLCD	EC:3.1.4.11	Inositol phosphate metabolism	map00562
			Calcium signaling pathway	map04020
			Phosphatidylinositol signaling system	map04070
			Thyroid hormone signaling pathway	map04919
			AGE-RAGE signaling pathway in diabetic complications	map04933

Gene Ontology

biological_process

GO:0006412 translation

GO:0006629 lipid metabolic process

GO:0007165 signal transduction

GO:0035556 intracellular signal transduction

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003735 structural constituent of ribosome

GO:0004435 phosphatidylinositol phospholipase C activity

GO:0005515 protein binding

GO:0008081 phosphoric diester hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004910.1	PF09279.6	EF-hand_like	31	76	1.30E-06
Glyur000023s00004910.1	PF00388.14	PI-PLC-X	91	221	1.90E-40
Glyur000023s00004910.1	PF00387.14	PI-PLC-Y	277	360	1.50E-19
Glyur000023s00004910.1	PF00168.25	C2	378	469	2.90E-15
Glyur000023s00004910.1	PF01248.21	Ribosomal_L7Ae	547	640	6.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.726
SRR1783600	control	60.966
SRR1783602	moderate drought stress	43.190
SRR1811619	moderate drought stress	42.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.879
DRR006520	Root Summer glycyrrhizin high producing strain	86.613
DRR006521	Root Winter glycyrrhizin high producing strain	41.689
DRR006522	Root Winter glycyrrhizin high producing strain	40.789
DRR006523	Root Summer glycyrrhizin low producing strain	64.182
DRR006524	Root Summer glycyrrhizin low producing strain	65.591
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.320

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	174.067
SRR2868004	Drought Stress (root)	110.565
SRR2967015	Control (root)	104.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	80.620
SRR9715740	Leaf	85.716
SRR9715741	Leaf	82.124
SRR9715739	Root	66.605
SRR9715742	Root	70.267
SRR9715743	Root	69.678

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	155.301
SRR8749028	MeJA induced 9h	54.725
SRR8749029	MeJA induced 9h	125.921
SRR8749030	Uninduced	12.515
SRR8749031	Uninduced	4.869
SRR8749032	Uninduced	18.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	120.738
SRR8400027	Control - Root	108.399