Gene detail

Gene detail information of Glyur000023s00004905.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40120.1	3.00E-170	Protein kinase superfamily protein
NR	KHN20842.1	0	Dual specificity protein kinase pom1 [Glycine soja]
COG	YP_005366773.1	1.00E-19	serine/threonine protein kinase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|P51567\|AFC2_ARATH	3.00E-45	Serine/threonine-protein kinase AFC2
trEMBL	tr\|I1M7T1\|I1M7T1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G06420.1}

Sequence

Transcript Sequence

>Glyur000023s00004905.1
ATGGCTGTGTCGAACGGCGTTGAAGCTGTGTTAGAGTTTCTGAGGAAGAATGGGTTATCGGAGGCAGAGTCTGCTCTCAGAGAAGACATCATCGAGAAGAGTACTACTACTACTGACCTTGCTTCCTTTGACTACGAGAAGTTCTTCTTTCCGATGGTGCCTCCTCCGCCGCCGGTTAGGGTCCGGTCGTTTTCACGGCCTCCGGAGGATCCTCCCGTTGCCGGAGACTCCTCCTCTTACAAATCGAGCTCTCCTTCTTCGGAGGAACAGTTTGTTAGCATCGGTTCATCTTCTTCTCAATTCATCAATCCATATGGAATCCGGTCTTCATCTCAGACTCAGAATGATTCAGAATCTTCATCTGATAGGATGTCCCAATTCGGCACGGCGCGTGATTATCACGATTTCGATATGCAAAACGAACCATATTGGTATAACGAAAAGGATGAGGATCATTTCATGACTCCTAGTTTTGAAGGGCCAGATTTCTTTGGAAGTCAAAGTGAAGATAAGTTTGTCACGACGGCGGAAACAGNAAACCAACCAGACAATTCTCTGGATCTTGGTTACAACTATGAGGAAATTCAAATAGAGGGAAATGATGGTTACATGGACAAGGCATGCCTTTGTAATCATTCCTCTGTTGGGAATGGAAATGTGACTTATTCAAAAGACTATTGTCATGTGGTAAACAAAGACCAGTTTGANAGGGAATTAGAGAGCAAGGCTGAGAAACATACTGTTGTGCATAATTGTGAAGTTCCATTTTGCAAAAGCTGTCCAGGTTCAGGAGATTCCTGTAGTGGGGATCCTATAAACTTCATCTACCCTAATTTGAAGGAAATCCATCTGAANGATTTTCATTTGAGGGATGTTGGGGATATTAACTCTTTTGATAAAAGTTTTGACTGCTATACTAAAAATGACANCAGTGAGAGGTACAAGGCTCCATATGACTTAACTATCAGAGTTGGTGAAACAGATCTACCAAATGGGCTTGACACCTATGAAGTACAAGATGGTCGGGAATTCACCGAAGAATGCCAAGATCCAGAGGTTGCCGTAGATGGAGAGGATACTACTGATGATGAGCTCTTGAAATACATTCAAGAGGATGAATATGAAGTATTTGACCTGAGAATTATACATAGAAAGAACAGGACTGGATTTGAAGAAAGCAAGGAAGTTCCCATTGTGCTAAATACAGTCATGGCTGGCAGGTACTATGTAACAGAATATCTTGGTTCAGCTGCCTTCAGTAGGGTTGTTCAGGCACATGATCTTCATATGGGAGTGGATGTTTGCTTGAAGATTATTAAAAATGACAAAGACTTCTTTGATCAAAGCTTAGATGAAATCAAGCTTCTTAAACTTGTCAATAAGCATGACCCAGCAGATAAACACCACATATTGCGTCTTTATGACTATTTCTACCATCAGGAGCATTTATTCATTGTGACTGAACTTCTGCGAGCAAACTTATATGAATTTCAGAAATTCAACCAAGAATCTGGAGGGGAAGCATATTTTACACTAAATAGATTGCAGCTCATTACGCGTCAGTGTTTGGAGGCATTGCAATACTTGCATAACTTGGGAATTGTTCATTGTGACCTAAAGCCAGAAAACATTCTAATTAAAAGTTACAAAAGGTGTGAGATAAAGGTTATTGATCTTGGAAGCAGTTGCTTTCAAACGGACAATCTGTGCCTATACGTGCAATCCCGATCCTATAGAGCTCCTGAAGTGATGTTAGGCCTTCAATATGATGAAAAGATTGATATATGGTCTCTTGGTTGTATTTTGGCTGAGCTGTGCTCTGGTGAAGTNCTCTTTCCAAATGATGCAGTTGTGATGATTCTCGCACGCATGATTGGAATGCTTGGTCCTATTGATATGGAGATGTTGGTGAAAGGNCAGGAAACACACAAGTACTTCACCAAAGAATATGATATTTACTATGTAAATGAGGAGACTGATCAACTAGAGTACATAATTCCAGAGGAGTCATCGTTGGAGCAGCACCTACAGGTCACCGATACTATGTTTATCGACTTTGTCAGATACTTGCTTAGCATAAACCCAAAAAGAAGGCCTACTGCAAGACAAGCACTAAAGCATCCATGGCTTTCCAATGTTTACAAGTCCAACTAACAACATTCTTTCTCTAGTGCAAGGTTCAGTAATTCTGTTGGAGTTATCCATATCAGTCTCATGAGCTTGTTTTTTTTNGCATATTGCGAATCTTGCAATCACAATTTTGGTTTGTTTATAAGAAACACCAAGTAAATTCAGTGTCTCATGGTGTATATCTTTTTTTGGGTTCCCTGTTGATTAATAGTTTGTTCTTTTGTACAGAACTTCNGCCCATTATTTTTGCCTTCCATGGATTGGAAGGTTTTGAGCATTACCAGAATAACATTTTCGTGACTTTTAACATTTAACACAAGTCACATAATACAGGGGTTCCTTGAAATTTGTTGAAGTAGACTTAATTTGGATTCATTGAAAAAACTATGTTCAGATACACTCATGCAAGTAATGATGGTTGGAACTACACTCATGCAAAAACAACATTCCTTGAACTTGAAATATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	248059	252806	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004905.1	PF00069.20	Pkinase	410	710	2.80E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.574
SRR1783600	control	8.755
SRR1783602	moderate drought stress	8.882
SRR1811619	moderate drought stress	8.574

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.804
DRR006520	Root Summer glycyrrhizin high producing strain	24.754
DRR006521	Root Winter glycyrrhizin high producing strain	25.495
DRR006522	Root Winter glycyrrhizin high producing strain	25.083
DRR006523	Root Summer glycyrrhizin low producing strain	22.336
DRR006524	Root Summer glycyrrhizin low producing strain	22.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.724
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.766

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.435
SRR2868004	Drought Stress (root)	28.335
SRR2967015	Control (root)	25.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.275
SRR9715740	Leaf	20.957
SRR9715741	Leaf	25.181
SRR9715739	Root	3.218
SRR9715742	Root	15.785
SRR9715743	Root	13.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.105
SRR8749028	MeJA induced 9h	17.056
SRR8749029	MeJA induced 9h	8.258
SRR8749030	Uninduced	21.883
SRR8749031	Uninduced	21.848
SRR8749032	Uninduced	11.782

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.086
SRR8400027	Control - Root	37.946