Gene detail

Gene detail information of Glyur000023s00004903

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05600.1	5.00E-148	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003616646.1	0	1-aminocyclopropane-1-carboxylate oxidase [Medicago truncatula]
COG	YP_004303697.1	1.00E-32	2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|D4N502\|DIOX3_PAPSO	4.00E-74	Codeine O-demethylase
trEMBL	tr\|G7K244\|G7K244_MEDTR	0	Leucoanthocyanidin dioxygenase-like protein {ECO:0000313\|EMBL:AES99604.1}

Sequence

Transcript Sequence

>Glyur000023s00004903.1
ATGAAGAATACCACCTTAGAAATCATCAATCCTAATAATAATCTTGCAGCAGCAAAAATGATCAATAGTAGCACTAGCCCACAAGATTGGCCTGAACCAATTATCCGGGTTCAGTCCTTATCCGAAAGCTGCAAAGATTCAATCCCTGAAAGATATGTCAAGCCCCCTAGTGATCGTCCATCTGAAGCTAAAACTAGTGCTTTTGATGATGCCAATAACATCAACATCCCAATCATTGACCTTGAAGGCCTATATGGAACAAACCCAGATGAAATTAGAGTCTCTACCCTTNGTCAAATCTCTGAGGCTTGCAGAAAGTGGGGATTTTTTCAAATTATAAATCATGGGGTTAGTCCTGATCTGATGGACATGGCAAGGGAAACTTGGCGCCAGTTCTTTCACCTACCCATGGAGGTGAAGCAGCAATATGCAAACTCNCCAAAGACTTATGAAGGGTATGGTAGCAGGCTTGGTGTTGAGAAAGGTGCTGTCCTTGATTGGAGTGACTACTATTATCTCCATTACCTTCCCTTGTCTTTGAAGGACTACAACAAATGGCCTTCTATGCCTCCCTCTTGCAGGGAAGTGTTTGATGAGTATGGGAGGGAGTTGGTGAAGTTATGTGGGAGGTTAATGAAGGTTCTGTCTATAAACCTTGGATTNGGAGAGGATTTTCTACAGAATGCTTTTGGGGGTGAAGACATTGGTGCTTGTTTAAGGGTGAATTTTTACCCAAAGTGTCCAAGGCCAGAACTGACACTGGGTCTGTCATCACACTCAGATCCAGGGGGCATGACTCTCTTGCTTCCAGATGATCAAGTACCTGGTCTTCAAGTCCGCAAAGGTGACACATGGATCACAGTGAAGCCTGTTCCCCATGCCTTTATTGTCAATATTGGTGATCAAATCCAGGTTCTAAGCAATGCAATCTACAAGAGTGTAGAGCACAGAGTACTAGTGAATTCACATCAAGAGAGAGTTTCACTAGCCTTCTTCTACAACCCCAAAAGTGACATACCAATAGAGCCAGCAAAAGAACTTGTGAAGCCAGAAAGGCCTGCACTCTACCCGGCTATGACCTTCGATGAATACAGGCTCTTCATTAGGATGAGAGGACCATGTGGAAAATCTCAAGTGGAATCTTTAAAATCTCCAAGATGATTGATGAATAATCAACAAGGGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	238025	241205	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004903.1	PF14226.1	DIOX_N	76	188	8.70E-32
Glyur000023s00004903.1	PF03171.15	2OG-FeII_Oxy	238	335	5.00E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.329
SRR1783600	control	1.257
SRR1783602	moderate drought stress	0.891
SRR1811619	moderate drought stress	0.971

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.799
DRR006520	Root Summer glycyrrhizin high producing strain	2.478
DRR006521	Root Winter glycyrrhizin high producing strain	1.972
DRR006522	Root Winter glycyrrhizin high producing strain	2.053
DRR006523	Root Summer glycyrrhizin low producing strain	1.270
DRR006524	Root Summer glycyrrhizin low producing strain	1.360
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.627
SRR2868004	Drought Stress (root)	37.663
SRR2967015	Control (root)	23.623

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	82.467
SRR9715740	Leaf	16.742
SRR9715741	Leaf	153.938
SRR9715739	Root	2.042
SRR9715742	Root	12.158
SRR9715743	Root	9.450

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.588
SRR8749028	MeJA induced 9h	32.459
SRR8749029	MeJA induced 9h	5.907
SRR8749030	Uninduced	76.571
SRR8749031	Uninduced	42.810
SRR8749032	Uninduced	58.377

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.132
SRR8400027	Control - Root	5.424