Gene detail information of Glyur000023s00004900.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40140.2 | 1.00E-151 | zinc finger (CCCH-type) family protein |
| NR | XP_003544707.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 1 [Glycine max] |
| Swissprot | tr|Q9XEE6|C3H29_ARATH | 0 | Zinc finger CCCH domain-containing protein 29 |
| trEMBL | tr|I1M6J5|I1M6J5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G01990.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 221422 | 224148 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004900.1 | PF12796.2 | Ank_2 | 88 | 192 | 1.10E-10 |
| Glyur000023s00004900.1 | PF00642.19 | zf-CCCH | 317 | 337 | 4.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.696 |
| SRR1783600 | control | 34.062 |
| SRR1783602 | moderate drought stress | 35.520 |
| SRR1811619 | moderate drought stress | 35.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 521.295 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 512.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.479 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 902.277 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 894.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 252.262 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 250.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 84.116 |
| SRR2868004 | Drought Stress (root) | 274.106 |
| SRR2967015 | Control (root) | 649.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 638.691 |
| SRR9715740 | Leaf | 954.893 |
| SRR9715741 | Leaf | 737.832 |
| SRR9715739 | Root | 1404.336 |
| SRR9715742 | Root | 1944.088 |
| SRR9715743 | Root | 1779.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 478.602 |
| SRR8749028 | MeJA induced 9h | 400.987 |
| SRR8749029 | MeJA induced 9h | 297.892 |
| SRR8749030 | Uninduced | 662.914 |
| SRR8749031 | Uninduced | 284.826 |
| SRR8749032 | Uninduced | 286.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 147.783 |
| SRR8400027 | Control - Root | 403.777 |