Gene detail

Gene detail information of Glyur000023s00004896

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11150.1	1.00E-59	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004491028.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 2-like [Cicer arietinum]
Swissprot	tr\|Q00985\|ACCO1_MALDO	6.00E-08	1-aminocyclopropane-1-carboxylate oxidase 1
trEMBL	tr\|I1JI97\|I1JI97_SOYBN	2.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G42490.1}

Sequence

Transcript Sequence

>Glyur000023s00004896.1
CATGAACAAACAACGGGTCCCAAAATTTTAGTCACAGTCACATTTTTCTTTTTGCACCACTTCACTTCTCTCACGTTATGGCCTCTTCAACTCACAAGCAACATCAACTCTTACCAAACCTCCACGGTGGCGCCACGTCAGCTCCNCCGCCAACGCCGTCAACCCACCCCAACAACAACCTCCTCTCAACTTCCGACGCCGCCGACGCACTCTCGCGCCTCCTCCACCGCCTGCCGCCCAATCTCTCTCTCCCCACCACCCGCCGCTCCTCTTCAGCCGCCACGTGTCCTCCCTCACTCTCCTTTTCCTCACTCACCCCCAACGATTTCCTCTCCTCCGTTTCCCAACTCGGTTTCGCTCAACTCACCGATCACTCCGTTCCCTCCGAACTCGCCAACTCGGCCGAGTCAGAAGCGCTCGCACTCTTCGACCTCCCACGTGACCAGAAGGAATCGCTCTTCCCCAAGAACTGGCCTTTGGGTTACGAAGGCGGTGACGACGACGANGAGGAAGAAGACGAAAACGGAGACGGACTCGCCGAGTCGTTCCGCCTTGACTCGTCGTGTTCGACCGAGTTGGCGCTGGATTCTCTGCGCCAGTTCGCACGTGCGCTGGAGAAGCTGGGGTTGANGATCGTTGACGTGTTAACGGAGGCATTGGGTGTTGAGAACCCGGTTGGTGATGACCCGAACCGGTTATGTTCCGTGTTGTGGGTTTCGGAGTGTTTGCACGGGACCAAACCCGGTTCATCGGGTGGGTTTTACCCGTTCGTAGTCGGGTTGCAGTACCAGATAAGGTGCCAGAAACACTCGTTGTTGTCGGATTCGGGTTGGGTTTCTGTGTTGCCACACGTGGACTCCATCTTGGTCACTGTTGGCGATATTGCTCAGGTATGGAGCAATGGCAAGCTAAAGAAAGTGAGAGGCAGACCAGTGGCCATGTTGGGAGATGAAAATGATTCACGTTGCATAACAATGTCATTGCTCATAACTCTTCCCACAGAGAGCAATGTTGCTCCACTCATTCCCAAAGCAACCATTATTGGCAACAGTAACAAGGACAAAATTGAAGAAGATGAAGAAGAAGAAGAAAGCAATATTAGTGGTGAAGTCCAAGAGATGATGTTCAACTCTTTTGATTTTGAGGATTATGCTTGGAGAGTCTACCATGAACGACTCCACTTCAAAGATCCACTGGATAGGTACCGTGTTACTCAAAAGTAGGAGTTGTGCCTCTCACACTAGCTGATAATACTNTTNTTTTTTTNTTTTNCAGTTTTCAGCCATTTGTGAGTTTAATTTGTGTGAGATTTATATTTTGTCATGCTAGTGTTAATTAGTCCAATAAGCTTTAAATTTTGGATGGTGGAATGAAAAAAAAATCAGAATTGAAAGGACAAACTATATATGATGAGATGTATATGCTCCATTTATTTATTGGATTGATTTTGAAGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	199026	201428	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004896.1	PF14226.1	DIOX_N	88	160	4.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.885
SRR1783600	control	10.095
SRR1783602	moderate drought stress	7.241
SRR1811619	moderate drought stress	7.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.839
DRR006520	Root Summer glycyrrhizin high producing strain	11.363
DRR006521	Root Winter glycyrrhizin high producing strain	3.847
DRR006522	Root Winter glycyrrhizin high producing strain	3.696
DRR006523	Root Summer glycyrrhizin low producing strain	15.759
DRR006524	Root Summer glycyrrhizin low producing strain	16.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.481

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.936
SRR2868004	Drought Stress (root)	24.184
SRR2967015	Control (root)	26.684

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.194
SRR9715740	Leaf	8.514
SRR9715741	Leaf	8.852
SRR9715739	Root	13.764
SRR9715742	Root	18.863
SRR9715743	Root	17.561

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.397
SRR8749028	MeJA induced 9h	2.791
SRR8749029	MeJA induced 9h	5.094
SRR8749030	Uninduced	2.249
SRR8749031	Uninduced	1.873
SRR8749032	Uninduced	4.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.041
SRR8400027	Control - Root	19.179