Gene detail

Gene detail information of Glyur000023s00004895

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55990.1	1.00E-148	Plant protein of unknown function (DUF828)
NR	XP_004491026.1	0	PREDICTED: uncharacterized protein LOC101515072 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9LY46\|TBL29_ARATH	0	Protein ESKIMO 1
trEMBL	tr\|V7B7G4\|V7B7G4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13749.1}

Sequence

Transcript Sequence

>Glyur000023s00004895.1
GTTGTTGTTCTTGTTACCATCTTCTCTTTCTTTCTTTCTCTATACCATGCAGCCCCTTCGAAGAAAGACTCCTCTTTTCAACTCAGAAACAGGGGTAACAATGAAGGGTAGAAAGAACAACAACCTCTCCGTTTTCGTGGTGGTGTTCTCAATTTTCCTCTTTGGGGTATTCATGTACAACGAGGACGTTAAGTCCATTGCAGAATTCCCATTTTCAAGGCCTAAAGCACAAGAAATCCAAAAGGTTGAACCTAAACAAGTAGTTGAGTCTGTTCAAGGGGTTGCAACAAGGGAAGACACTGTTGTTGTTGAACAAAGGGACCCCAAGAAAGATGATGATGTTGTGGAAGAAGAAGATAGTGACACTGTAACAGTGACGGTTTCTAAGAATTCAAGAGCTCAACTTGGGAAAAGCCAGGATGATGAAGATAATTCTGATTCTGATGAAACAACAACAACAACAACAGCACAAGGGGGTGTTTCTTTGAAAAGGGTTGTGGTGACAGAGAAAGAGGAATTAGAAGGAGAGGGAGAAGAAGAAAAAGAAGAAGAAATAGAAGAGGTTGTTGAGTTGCCACCAGAAGATTGTGACTTGTTCACAGGGGAATGGGTTTTGGATAATTTGACACACCCNTTGTACAAAGAAGATGAATGTGAATTCCTCACTTCTCAAGTTACATGCATGAAGAATGGAAGACCTGATTCTATGTATCANAATTGGAGATGGCAGCCTAGAGATTGCAACCTTCCAAAGTTCAAGCCAAGACTGTTGTTTGAGAAGATTAGAGGGAAGAGGCTAATGTTTGTTGGAGACTCACTGAATAGGAACCAATGGGAATCAATGGTTTGTATGGTCCAATCTGCGGTTCCTTTAGAGAAAAAGACCTGGTACAAGAATGGTTCTCTTGCCATCTTAAAAATTGAGGAGCCAGGGCACATTATTACAACGGTGGAATTCTATTGGGCACCATTTCTTGTGGAGTCAAATTCAGATGATCCAAACATGCATAGCATATTGAACCGAATAATCATGCCTGAATCNATAGAAAAGCATGGTGTGAATTGGAAGAATGTGGACTACTTGATCTTCAACACCTACATTTGGTGGATGAACACTTTCAATATGAAAGTCTTACGAGGGTCATTTGATGAAGGGTCCACGGAATACGATGAAGTGGCTCGGCCAGAAGCATATGAGAGAGTGCTTAAGACATGGTCAACATGGTTTTCTTCACCAGCACGTCCCCGCTACATATCAATTCTCAATATGTCGACCCCTTTGAATGTGGGCACAGATCGTCGCCTTTTTGTCATTGCCAACAATGTGACAAAGTCAATGAAGGTGCCGGTGTACTTCATTAACATCACAACCTTATCAGAGTATCGAAAAGATGCACACACCTCTGTTTACACCATACGTCAAGGGAAGATGCTAACACCAGAACAACAAGCTGACCCAACTACTTATGCAGATTGTATCCATTGGTGTTTACCAGGATTACCAGATACTTGGAACGAGTTCCTTTACACGCGTATCATCTCTCAATCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	189522	193627	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0050826 response to freezing

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004895.1	PF14416.1	PMR5N	179	233	1.40E-22
Glyur000023s00004895.1	PF13839.1	PC-Esterase	234	497	1.20E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.464
SRR1783600	control	5.274
SRR1783602	moderate drought stress	4.259
SRR1811619	moderate drought stress	3.897

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.219
DRR006520	Root Summer glycyrrhizin high producing strain	8.378
DRR006521	Root Winter glycyrrhizin high producing strain	2.293
DRR006522	Root Winter glycyrrhizin high producing strain	2.032
DRR006523	Root Summer glycyrrhizin low producing strain	7.439
DRR006524	Root Summer glycyrrhizin low producing strain	6.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.843
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.814

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.212
SRR2868004	Drought Stress (root)	41.599
SRR2967015	Control (root)	29.503

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.014
SRR9715740	Leaf	12.815
SRR9715741	Leaf	9.188
SRR9715739	Root	1.412
SRR9715742	Root	8.978
SRR9715743	Root	7.616

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.243
SRR8749028	MeJA induced 9h	1.071
SRR8749029	MeJA induced 9h	0.422
SRR8749030	Uninduced	3.837
SRR8749031	Uninduced	2.986
SRR8749032	Uninduced	0.797

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.477
SRR8400027	Control - Root	20.689