Gene detail information of Glyur000023s00004894 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G05560.1 | 0 | E3 ubiquitin ligase, putative |
| NR | XP_004491057.1 | 0 | PREDICTED: anaphase-promoting complex subunit 1-like [Cicer arietinum] |
| Swissprot | tr|Q9FFF9|APC1_ARATH | 0 | Anaphase-promoting complex subunit 1 |
| trEMBL | tr|G7K258|G7K258_MEDTR | 0 | Anaphase-promoting complex subunit 1 {ECO:0000313|EMBL:AES99618.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 165120 | 188392 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.989 |
| SRR1783600 | control | 6.904 |
| SRR1783602 | moderate drought stress | 8.379 |
| SRR1811619 | moderate drought stress | 8.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.157 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.749 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.655 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.759 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.702 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.749 |
| SRR2868004 | Drought Stress (root) | 16.054 |
| SRR2967015 | Control (root) | 14.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.007 |
| SRR9715740 | Leaf | 6.255 |
| SRR9715741 | Leaf | 4.711 |
| SRR9715739 | Root | 4.688 |
| SRR9715742 | Root | 9.275 |
| SRR9715743 | Root | 8.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.884 |
| SRR8749028 | MeJA induced 9h | 6.388 |
| SRR8749029 | MeJA induced 9h | 6.554 |
| SRR8749030 | Uninduced | 0.879 |
| SRR8749031 | Uninduced | 0.667 |
| SRR8749032 | Uninduced | 1.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.905 |
| SRR8400027 | Control - Root | 21.846 |