Gene detail

Gene detail information of Glyur000023s00004885

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40230.1	2.00E-146	HXXXD-type acyl-transferase family protein
NR	XP_007141748.1	0	hypothetical protein PHAVU_008G222300g [Phaseolus vulgaris]
Swissprot	tr\|Q94CD1\|HHT1_ARATH	1.00E-49	Omega-hydroxypalmitate O-feruloyl transferase
trEMBL	tr\|V7B783\|V7B783_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW13742.1}

Sequence

Transcript Sequence

>Glyur000023s00004885.1
ATGGTGGTTACTCCTTGTGACCCCACCCCATCCTGTGTCCTTTCTCTATCAGCACTCGACTCACAACTCTTCCTTCGTTTCACCATAGAGTACCTCTTCGTCTACGAGGCTCGAACCGGTTTGGACCAGGTTGCAACCACGGCTCGTCTCAAATCCGCATTAGCCAAAGCACTTGTTCCCTATTACCCATTCGCTGGAAGGGTCAGGCCCAGACTCACTGATGGCGCCTGCCTTGAAGTTGTGTGTGGGGCCCAGGGTGCGGTTTTCATCGAGGCCTTCTCCGACCGTTACAACGCCAACGACTTCGTGATGAAAGCACCCAAAACGGTTACACACTGGAGGAAGCTACTTTCCCTCCACGTGGCAGATGTTCTCAAGGGATCGCCTCCGCTGGTTGTTCAGCTGACGTGGCTCGCCGACGGAGCCGCCGCGATCGCCGTCGGGATAAACCATTGCATCTGCGACGGAATCGGGAGCGGTGAGTTTCTCAACTACTTCGCCGAGTTAGCTTCCGGGAAACTCACTGGGTTAGTACCAAAACCCGTTTGGGACCGTCACCTTCTGAACCCGCCACACGGGAAGTTCAAGCACGCGCGGGTTAACCCGGCGAGTCACCCCGAGTTCAACCGGGTCCCTGACCTGTGTGGCTTCATGAACCGAGTCACCAGCGGGCTTAAGCCAACCTCGCTTGTCTTCGACAAGAGGCGACTCGGCGAGCTCAAGANACTCGCCCGATTCACAAGCCAACCAGGTCCGGAGTCATCGAACTACACGTCGTTCGAGGTGCTCGCNGCTCACGTGTGGAGGAGCTGGGCGAGGGCGCTGGGGTTTCCGCCGAACCAAACGCTGAAGCTGTTGTTCAGCGTGAACGTACGGAACAGGGTCAAACGGGGTTTACCCGAGGGGTATTACGGGAACGCGTTCGTTTTGGGGTGTGCGGAGACAAGTGCGAGGGAGTTGGAGGAGAGAGGGGTCGGGTACGGGTCGGGTTTGGTGAGGGAGGCGAAGGAGAGGGTTGGGAACGAGCACGTGAGGGGCGTGACTGAGCTGGTGTCGTCGGAACGGAGGGCGAGTCCTGACTCGGTTGGGGTTCTGATAGTGTCGCAGTGGTCAAGGCTGGGCCTGGAGAGGGTTGACGTGGGGATGGGAAAGCCCGTTCACGTGGGACCCGTGTGCTGTGATAGGTACTGTTTGTTTCTGCCGGTGAGAGGTGACAGTGTGAGTGTGAAGGTCATGGTTGCTGTCCCCACACCTGCCGTTGACAATTACGAGTTTTTTATGCGAGGGTCGCACGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00023	94564	95862	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000023s00004885.1	PF02458.10	Transferase	2	417	6.10E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.545
SRR1783600	control	1.494
SRR1783602	moderate drought stress	1.855
SRR1811619	moderate drought stress	1.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.503
DRR006520	Root Summer glycyrrhizin high producing strain	1.573
DRR006521	Root Winter glycyrrhizin high producing strain	2.239
DRR006522	Root Winter glycyrrhizin high producing strain	1.903
DRR006523	Root Summer glycyrrhizin low producing strain	3.654
DRR006524	Root Summer glycyrrhizin low producing strain	3.753
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.082
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.229

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.121
SRR2868004	Drought Stress (root)	1.525
SRR2967015	Control (root)	2.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.619
SRR9715740	Leaf	10.040
SRR9715741	Leaf	3.228
SRR9715739	Root	5.975
SRR9715742	Root	3.818
SRR9715743	Root	4.515

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.088
SRR8749028	MeJA induced 9h	0.181
SRR8749029	MeJA induced 9h	0.359
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.985
SRR8400027	Control - Root	3.415