Gene detail information of Glyur000023s00004869 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40280.1 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | KHN38532.1 | 0 | Putative methyltransferase PMT23 [Glycine soja] |
| COG | YP_076375.1 | 4.00E-07 | hypothetical protein STH2546 [Symbiobacterium thermophilum IAM 14863] |
| Swissprot | tr|Q9SIZ3|PMTN_ARATH | 0 | Probable methyltransferase PMT23 |
| trEMBL | tr|I1JIE7|I1JIE7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G43110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00023 | 27255 | 31561 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000023s00004869.1 | PF03141.11 | Methyltransf_29 | 121 | 609 | 1.80E-206 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.357 |
| SRR1783600 | control | 10.257 |
| SRR1783602 | moderate drought stress | 9.229 |
| SRR1811619 | moderate drought stress | 8.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.122 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.210 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.375 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.348 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.787 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.709 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.796 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.515 |
| SRR2868004 | Drought Stress (root) | 12.648 |
| SRR2967015 | Control (root) | 11.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.250 |
| SRR9715740 | Leaf | 4.416 |
| SRR9715741 | Leaf | 4.783 |
| SRR9715739 | Root | 4.749 |
| SRR9715742 | Root | 10.691 |
| SRR9715743 | Root | 10.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.865 |
| SRR8749028 | MeJA induced 9h | 33.139 |
| SRR8749029 | MeJA induced 9h | 50.053 |
| SRR8749030 | Uninduced | 22.652 |
| SRR8749031 | Uninduced | 27.406 |
| SRR8749032 | Uninduced | 31.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.418 |
| SRR8400027 | Control - Root | 13.712 |