Gene detail information of Glyur000022s00002081.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19790.1 | 2.00E-11 | related to AP2 11 |
| NR | XP_004516576.1 | 2.20E-138 | PREDICTED: dehydration-responsive element-binding protein 2F-like [Cicer arietinum] |
| Swissprot | tr|Q6J9S1|RA211_ARATH | 1.00E-26 | Ethylene-responsive transcription factor RAP2-11 |
| trEMBL | tr|A0A072ULZ7|A0A072ULZ7_MEDTR | 4.00E-136 | AP2/ERF domain transcription factor {ECO:0000313|EMBL:KEH30804.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 566305 | 567231 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002081.1 | PF00847.15 | AP2 | 44 | 93 | 1.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.276 |
| SRR1783600 | control | 0.264 |
| SRR1783602 | moderate drought stress | 0.037 |
| SRR1811619 | moderate drought stress | 0.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.116 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.685 |
| SRR2868004 | Drought Stress (root) | 0.325 |
| SRR2967015 | Control (root) | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.068 |
| SRR9715741 | Leaf | 0.141 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.085 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.491 |
| SRR8749030 | Uninduced | 0.030 |
| SRR8749031 | Uninduced | 0.451 |
| SRR8749032 | Uninduced | 0.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.614 |
| SRR8400027 | Control - Root | 0.965 |