Gene detail

Gene detail information of Glyur000022s00002074.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14000.1	0	VH1-interacting kinase
NR	KEH30795.1	0	dual specificity kinase splA-like protein [Medicago truncatula]
COG	YP_004904659.1	6.00E-30	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	2.00E-46	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A072UY58\|A0A072UY58_MEDTR	0	Dual specificity kinase splA-like protein {ECO:0000313\|EMBL:KEH30795.1}

Sequence

Transcript Sequence

>Glyur000022s00002074.1
CTTCATTGTTGGATGTGTTCTTAGTTTACCCATGAATCTGGTGAACGATCCGTTCAGGTAACAATAATGATAAAAATAGAAAGGACATAAAGAGGGGGCAGCAACGCGTATACCCCACACGCAGCCAAGCCAAGGAAATTAAAAGTGGAAGGAAATGCTTTGCAAATTGCAGTTCGCACTCGACACTCGCTAAAAGAGAATAACCGACACTNGAACAGCTTGAACCATTCTTTCTGATTCGTGAAATCGTTAAGTAGCCGATGAGTTCCGGCGGCGGCAGCAGCAGGGAGAAGGAGAAAGAGAAGGCGAGGGTGAGCCGCACGTCACTGATTCTGTGGCACGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTTCAGGAGGATCCCTCGCTTGTGAATGCCACAGATTACGACCACCGCACTCCGCTCCACGTCGCTTCCCTCCACGGTTGGATCGACGTCGCCAACTGCTTGATTGAATTCGGCGCCGATGTCAACGCTCAGGATCGTTGGAAAAACACTCCTTTGGCTGATGCAGAAGGAGCTAAAAGGACTAACATGATCGAGCTTTTGACATCACACGGAGGCTTGTCTTATGGCCAAAACGGAAGCCATTTTGAACCCAAGCCTGTTCCGCCCCCGTTGCCTAACAAGTGTGACTGGGAAATCGATCCTTCTGAGCTCGACTTCTCAAATTCTGCGCGTATTGGAAAGGGATCATTCGGTGAGATTTTGAAAGCCCATTGGCGTGGAACACCAGTTGCTGTCAAACGCATTCTTCCATCTCTTTCAGAAGATAGAATGGTGATTCAGGACTTTAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTTACCGACAGGAAGCCCCTTATGTTGATCACTGAGTATCTAAGAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTCCACTTAGTCCTTCAACAGCTATCAACTTTTCCATGGATATTGCCAGAGGAATGGCCTATCTTCACAACGAACCAAATGTTATAATTCATAGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCTGATCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACTGTCCAGAGTTCTCATGATGTATACAAGATGACCGACCGCTATATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGACGTGTACTCCTTTGCAATGATTCTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCTTATGATGGAGCAAAACACGCAGCTGAAGGACACAGACCTACTTTTCGGGCAAAGGGTTATATCCCTGAATTGCAAGAGTTAACGCAACAGTGTTGGGCTGCTGACATGAATCAAAGACCCTCTTTCATAGAGATCCTTAAACGGCTTGANAAGATCAAGGAAAATTTACCTTCAGAACATCACTGGCACTTGTTCACTTCATAAGTGTTTACGAACATTGATATGTTCAGAAATTCAGATGATTTATTTGGCATTACCATTCCAGTGGTTTACCTTTTCTATTGCTGCCCGGATATATGGATTGGTAGGGCTTAACTGGAAAACCTGCAAAATCAATACTTGTTTTCAGCTGTTTGGATTGATGACCAGAGTAGGCGGTGTTCATTGCTTTTTTCTGGTTTCTATGTTCCAATTCTGCTTCGTCATTAAAGCTCGTGTCCCGTTCAAGTGAGCATCTGCAAGTTGTTGCTCAAGGGTAATGTGTTTTAGGTGTACAAACCAATTGAAGTAGGGCACATGGTGCTGTCTGTTGTGTTGTGTTTCATCTTTTATTTTAAAAATTAATAATAGTTTCCATTCTTGTATTATGTTTTATGTATTTCTGTGGCATAGACGCTGCCAATTTTTTTTTGGNTTACCATTCTCGCTGGAGTTCTATTTTGCTGTTTTCACGTGAATTTAGTTATTTGATGTGGAAAAAAATGCTGTCTTAAATTGTGGACTGGGGACTAGCTCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	545927	551317	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002074.1	PF12796.2	Ank_2	28	110	5.20E-13
Glyur000022s00002074.1	PF00069.20	Pkinase	148	397	3.80E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.285
SRR1783600	control	35.117
SRR1783602	moderate drought stress	25.060
SRR1811619	moderate drought stress	25.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.324
DRR006520	Root Summer glycyrrhizin high producing strain	76.160
DRR006521	Root Winter glycyrrhizin high producing strain	53.759
DRR006522	Root Winter glycyrrhizin high producing strain	52.443
DRR006523	Root Summer glycyrrhizin low producing strain	110.790
DRR006524	Root Summer glycyrrhizin low producing strain	111.644
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.277
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.372

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.223
SRR2868004	Drought Stress (root)	54.109
SRR2967015	Control (root)	45.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	58.784
SRR9715740	Leaf	40.837
SRR9715741	Leaf	67.689
SRR9715739	Root	41.701
SRR9715742	Root	101.626
SRR9715743	Root	89.385

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.973
SRR8749028	MeJA induced 9h	52.869
SRR8749029	MeJA induced 9h	56.572
SRR8749030	Uninduced	69.417
SRR8749031	Uninduced	55.493
SRR8749032	Uninduced	43.834

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.748
SRR8400027	Control - Root	57.697