Gene detail

Gene detail information of Glyur000022s00002071.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14020.1	0	O-fucosyltransferase family protein
NR	KEH30793.1	0	O-fucosyltransferase family protein [Medicago truncatula]
Swissprot	tr\|Q8W486\|Y1491_ARATH	5.00E-94	Uncharacterized protein At1g04910
trEMBL	tr\|A0A072UP41\|A0A072UP41_MEDTR	0	O-fucosyltransferase family protein {ECO:0000313\|EMBL:KEH30793.1}

Sequence

Transcript Sequence

>Glyur000022s00002071.1
CGACAATTTCCATTGAACCTTCTGTGTTTGTTTGTTCCGATTTGATCCTTTCTCTTCATTCACCTTGGATCTTTACTCTGTCTTGTACTTCCTCTCTTCTTTCTCCATAACAACTTTCTATTTTATAAAAAAATATGTTTTTCTCGTTCTTCTTCCCTGATTCCTGAAGAGCTTCAAATCCTGTTGAAACAACTGGGGGCGGAAAGATCTTATTTTGAGCCCGACCCGCAATCACCCGCTTCAATTTCAATTCTGGGTCGGTTCCGATTCCTTCAAAAGCCGCAAAACAGTGCGATTCACTTCGTTGCAGTGTTCGTGTCTTAGTATAATGTTTGATTTTGGTCGTTGTGGGATTGTTGGAAAGTGTGTCTGTGTGACGGTTATGGTGATGAAGCNGCAATGAGGCGTGTGGCAGAGGAATGGAGGTTAGATCGGAGGGTATTCAAGTGAGGTGCGATAAGCTTCAGGCTCCTGTGATTCCGAGGAGCCGTTTGCGGGTTTGGTTCATTCGAGTGTGTTCAAGCATTGTGCTGTGGACATGCTTGGTTCAGCTAGTGACAGTGAGTGAACTGTGGCATTCGCATTTCATTTCTGGTTTTACCAATCGCATATATCACACAACTCAACGTCCTCTTCAAGCGCAAATTGGACTTGCTCAATCGCCTCCTCCTTTACTTCCTCCAAGAAATTATACTAGTAATGGTTTTTTAAGAGTGTCCTGCAATGGGGGTTTGAATCAAATGCGTGCAGCGATTTGTGATATGGTGGCAGTTGCTCGANTTTTGAACCTCACATTGGTTGTTCCAGAGCTTGATAAGAAATCCTTTTGGGCAGACCCTAGTAATTTCGAGGACATATTTGATGTAAGACATTTCATTGATTCTCTACGAGATGAAGTTCGAATAGTGAAAAGAGTGCCCAAAAGGTTTGGTAGGAAAAGTGGATACTCTACCCTGGAGATGCCTCCTGTTAGCTGGTCAACCGAAAAGTATTACTTGGAGCAGATTCTGCCACTTTTTGGCAAGCATAAGGTGGTACACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCTCACTTGATCTACAGAAACTTAGGTGTCGTGTTAATTACCAGGCACTTAAATTCACTCCTCAAATTGAGAATTTGGGGGAAAGGTTGATTCAGATACTTCGTGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGTTGGCTTTCTCAGGTTGTACTCATGGTTGTGCTAATGAAGAAGCTGAGGAGCTCAAGCGGATGAGATACGCATTCCCTTCATGGAGAGAAAAGGAGATAGTGTCTGAAGAAAGGAGATCACAGGGTCTCTGTCCCTTGATACCAGAGGAGGCAGCCTTAGTTATGCAAGCCTTAGATTTTGATAAGAAGACACAGATCTATATTGCAGCTGGTGAGATTTATGGTGGTGAACGTAGACTTGCACAACTGAGAGCTGCATTTCCAAGAGTTGTTAAAAAGGAGACATTGCTGGCCCATGATGAGTTGCAGCAGTTCCAAAATCATTCATCGCAGATGGCAGCTTTGGATTTTATGGTTTCGGTAGCCAGTAACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGTCACCGCAGGTATTCTGGTTTTAAAAAATCCATCTTGTTGGATCGGAAAAAACTTGTACCATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATAAGTTTGCAGATGCCGTGCGACAGGTTCATGAAAAGAGAATGGGACAGCCAACTTATCGTAGAGTTATTGTGGACAAGCCAAAGGAGGAGGATTATTTCTATGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGACTTGCTAGGTCCTCATAACTCTAGTCAAGTAAGATGAGTACAAGCGGTCGAAGGTAGAAATGCTCTCTTGTCCCAACCATGAGTGTGAAAGAGGAATCTGAACTCCTTTCCACTAAGTTGCTCATGTGTTGTTAAAGAATCCAGATCACTAGCATGAGTTCTTAGAGATTTATGTACACCTGATNTTGTAGGAAACCATGGGGATAAAAGAGAAAAAGAGAANAGAAAAAGAAGGAAATATCAGCTTATACTGAGGCTTGCAAAGCTGTATATTCGGTTTTATCCTTAATTTTTTTTCCAAATTCAGTATAGTTGTATAACAATAGTTTGTTCACATCATGCATTCTAGAGTTCAATCTCAATACCATCACGATGGTACCACCAGCACAGAAGTGTAATTCATGCATTACATTTTCTTCTCTACCAGCTGCAGTCAGGTAATGGGTTGTAATAATTGGGGCTGAGTCAAAAACCTGACCATGATCCTCTTCAAAGACGCATGGCAAGGCATACGTTCATTTTAGAAGATTCCATTTATGACTTACCAAGTGTTCTGTAGACAAATAGTGTGTCCTTANCGGATGGCAATTGTTTCCTGCAACAATATTAAAAGAATTTTGCGAGATCCCCAAGGATATCACCACTTTCTCCGCAAAGTCCAAGCTGCTTGAGCCTCCTTTCTTGATAATATTCTAACTGGTCCAATTCCAATTCTTTCTCCTTGAAGATCTCATCAATTCGCTGCAGGACCATCTTCTCCCCTTCTCTTATTCCAACTGCTATTGCAAGCCTTGAATCTAGATCTGCTTCTTTCAACTTGCGATCCTGCCATTCATTTATATGCTTTGTTCACTTATATGTTGATCTCAAACAGCTTCAAATTTNTCACAATTTAAAGTGCATGCACCATTGTAAGATGTAATGTAGCTACTTTAAATGTATTAATTGTTCATGTCAAAAGTTGAAAATTTTTATGGAGAGATATAAACATGGAGTCATGTGAAATTTTAACATGAGTTTCCCTGAGCCTTAAAANTGCACAGTCATTACCTCTTCAATGGTTGTATGATAACCAGCAAGGGCAGATTTGCAGGCTTGTCGAACCACTCTGCATATTAGCTCCTCATTGTCACGGCTCACAGGCAATTCAAGATGATCCCAGATGGAGTTTCTGAACAGTGCTTCCAATAAGAAAGCATCATTGCCCCCTAAAGCTACTAGTCTCAGATATGGAAGCAACCCTGATGGAAGAGGGCTGTTGTAGAAGATGTCAAAGTATGCTGTCTCACCAAAACCATTGGACTCAGCAATGTCTAGTTTGTCACCAAAAAAGGGGTCTGACTCAGATATCTCCAATGTCAGGGTATATGCAATCCGATCTGTATTTGGTTCAATGAAACCGTAGTCCAGAGCCAACTCGGCATTGCTTTTCTTTAAATCATATTGAATATATATCTGCAGCAAAATTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	531173	536407	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002071.1	PF10250.4	O-FucT	100	419	1.40E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.109
SRR1783600	control	8.244
SRR1783602	moderate drought stress	7.371
SRR1811619	moderate drought stress	7.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.843
DRR006520	Root Summer glycyrrhizin high producing strain	9.641
DRR006521	Root Winter glycyrrhizin high producing strain	13.652
DRR006522	Root Winter glycyrrhizin high producing strain	13.399
DRR006523	Root Summer glycyrrhizin low producing strain	6.041
DRR006524	Root Summer glycyrrhizin low producing strain	5.959
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.880
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.390
SRR2868004	Drought Stress (root)	12.365
SRR2967015	Control (root)	13.978

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.070
SRR9715740	Leaf	14.890
SRR9715741	Leaf	11.287
SRR9715739	Root	3.787
SRR9715742	Root	9.248
SRR9715743	Root	9.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.313
SRR8749028	MeJA induced 9h	12.945
SRR8749029	MeJA induced 9h	13.152
SRR8749030	Uninduced	10.850
SRR8749031	Uninduced	11.979
SRR8749032	Uninduced	12.526

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.537
SRR8400027	Control - Root	16.906