Gene detail

Gene detail information of Glyur000022s00002070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14030.1	7.00E-160	Rubisco methyltransferase family protein
NR	KEH30792.1	0	rubisco large subunit N-methyltransferase [Medicago truncatula]
Swissprot	tr\|Q43088\|RBCMT_PEA	0	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A072UM69\|A0A072UM69_MEDTR	0	Rubisco large subunit N-methyltransferase {ECO:0000313\|EMBL:KEH30792.1}

Sequence

Transcript Sequence

>Glyur000022s00002070.1
ATGGCTACTGTGTTTTCTATAGGTTCAGGTTTTCCTTCTCTTTTTCACAGCAAGGGCTTGTCCTTTGCAGCCAAAGGGCCACTCCAGCTGAAGAGGCCTCTCATCTCTGCAAAGTCAGTTGCTTCGGTGGGAACTGAGACATCACTGTCTCCAGCAGTTCAAACCTTCTGGCAGTGGCTGAAGGAAGAAGGTGTTGTCTCTGGCAAGACCCCAGTGAAGGCTGGTGTGGTCCCAGAAGGCCTAGGACTGGTTGCCCTCAAAGACATTTCTAGGAATGAGGTTGTTTTGCAGGTACCTAAGAGGCTGTGGATAAACCCAGATGCAGTTGCAGCTTCAGAGATTGGGAATGTGTGCAGTGGGTTGAAGCCATGGTTGGCTGTTGCACTCTTTCTCATAAGGGAGAGGTCAAGGGATGATTCTCTTTGGAAGNACTACTTCAGTATTCTGCCACAGGAAACTGATTCCACAATATATTGGTCAGAGGAAGAGCTCTCAGAGCTTCAAGGTACTCAACTTCTGAGCACAACACTCTCTGTGAAAGAATATGTGAAGAATGAATATCTGAGACTGGAAGAAGAAATCATTCTCCCTAATAAGAAGCTTTTCCCTTCTCCTGTAACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAACGAAAATTTGGTTGTAATTCCACTAGCAGACTTGTCAATACAATCCCCTTCAACAAAAAATAAAAATGACGTTTTCCAAATTCAATTTCTGGATCAGATTAACCACAGTGCCAGTGTAACCACAGAAGATCATGCNTATGAAGTTAAAGGAGCAGCAGGCCTTTTCTCTTGGGATTACCTATTTTCCTTAAGGAGCCCCCTTTCTGTCAAGGCTGGGGAGCAGATATATATTCAATATGATTTAAAGAAAAGCAATGCCGAGTTGGCTCTGGACTACGGTTTCATTGAACCAAATACAGATCGGATTGCATATACCCTGACATTGGAGATATCTGAGTCAGACCCCTTTTTTGGTGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTTCTACAACAGCCCTCTTCCATCAGGGTTGCTTCCATATCTGAGACTAGTAGCTTTAGGGGGCAATGATGCTTTCTTATTGGAAGCACTGTTCAGAAACTCCATCTGGGATCATCTTGAATTGCCTGTGAGCCGTGACAATGAGGAGCTAATATGCAGAGTGGTTCGACAAGCCTGCAAATCTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATCGCAAGTTGAAAGAAGCAGATCTAGATTCAAGGCTTGCAATAGCAGTTGGAATAAGAGAAGGGGAGAAGATGGTCCTGCAGCGAATTGATGAGATCTTCAAGGAGAAAGAATTGGAATTGGACCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGCAGCTTGGACTTTGCGGAGAAAGTGGTGATATCCTTGGGGATCTCGCAAAATTCTTTTAATATTGTTGCAGGAAACAATTGCCATCCGNTAAGGACACACTATTTGTCTACAGAACACTTGGTAAGTCATAAATGGAATCTTCTAAAATGAACGTATGCCTTGCCATGCGTCTTTGAAGAGGATCATGGTCAGGTTTTTGACTCAGCCCCAATTATTACAACCCATTACCTGACTGCAGCTGGTAGAGAAGAAAATGTAATGCATGAATTACACTTCTGTGCTGGTGGTACCATCGTGATGGTATTGAGATTGAACTCTAGAATGCATGATGTGAACAAACTATTGTTATACAACTATACTGAATTTGGAAAAAAAATTAAGGATAAAACCGAATATACAGCTTTGCAAGCCTCAGTATAAGCTGATATTTCCTTCTTTTTCTNTTCTCTTTTTCTCTTTTATCCCCATGGTTTCCTACAANATCAGGTGTACATAAATCTCTAAGAACTCATGCTAGTGATCTGGATTCTTTAACAACACATGAGCAACTTAGTGGAAAGGAGTTCAGATTCCTCTTTCACACTCATGGTTGGGACAAGAGAGCATTTCTACCTTCGACCGCTTGTACTCATCTTACTTGACTAGAGTTATGAGGACCTAGCAAGTCATCACACTTTGTTCCCTCACAAAGGCACTCATGAGGGTTGGCATAGAAATAATCCTCCTCCTTTGGCTTGTCCACAATAACTCTACGATAAGTTGGCTGTCCCATTCTCTTTTCATGAACCTGTCGCACGGCATCTGCAAACTTATTCCATGGAAGGGTTCCATTTTGATGCATATCAAGCAATGGTACAAGTTTTTTCCGATCCAACAAGATGGATTTTTTAAAACCAGAATACCTGCAGGGGGACTAATTAGAAGTTTTTTCTTTAAGTTTTTTTGTTAAGGCTGCTTTTAGCCTTCTATATAAGATGAAACTGCAACTAGCAAGAGTAAATAAATAAATACATACCTGCGGTGACCTTCCACAAGTTTTGCCATGTTCCCATCATAGGTAGGAATAAAGGTGTTACTGGCTACCGAAACCATAAAATCCAAAGCTGCCATCTGCGATGAATGATTTTGGAACTGCTGCAACTCATCATGGGCCAGCAATGTCTCCTTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	529506	533149	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0009507 chloroplast

molecular_function

GO:0005515 protein binding

GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002070.1	PF09273.6	Rubis-subs-bind	338	464	3.90E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.269
SRR1783600	control	4.326
SRR1783602	moderate drought stress	4.342
SRR1811619	moderate drought stress	4.911

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.143
DRR006520	Root Summer glycyrrhizin high producing strain	5.668
DRR006521	Root Winter glycyrrhizin high producing strain	8.047
DRR006522	Root Winter glycyrrhizin high producing strain	8.142
DRR006523	Root Summer glycyrrhizin low producing strain	3.436
DRR006524	Root Summer glycyrrhizin low producing strain	3.247
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.548

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.466
SRR2868004	Drought Stress (root)	3.227
SRR2967015	Control (root)	3.243

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.664
SRR9715740	Leaf	25.607
SRR9715741	Leaf	14.363
SRR9715739	Root	1.483
SRR9715742	Root	3.431
SRR9715743	Root	3.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.800
SRR8749028	MeJA induced 9h	6.206
SRR8749029	MeJA induced 9h	7.653
SRR8749030	Uninduced	8.236
SRR8749031	Uninduced	6.503
SRR8749032	Uninduced	9.727

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.874
SRR8400027	Control - Root	5.043