Gene detail information of Glyur000022s00002060 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G03090.1 | 1.00E-104 | expansin A15 |
| NR | NP_001266033.1 | 4.82E-169 | expansin-A15-like precursor [Cicer arietinum] |
| Swissprot | tr|O80622|EXP15_ARATH | 5.00E-151 | Expansin-A15 (Precursor) |
| trEMBL | tr|Q8L5G4|Q8L5G4_CICAR | 2.00E-169 | Alpha-expansin 4 {ECO:0000313|EMBL:CAD33924.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 473897 | 475974 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002060.1 | PF03330.13 | DPBB_1 | 84 | 169 | 1.10E-24 |
| Glyur000022s00002060.1 | PF01357.16 | Pollen_allerg_1 | 180 | 257 | 7.90E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 346.283 |
| SRR1783600 | control | 348.185 |
| SRR1783602 | moderate drought stress | 33.600 |
| SRR1811619 | moderate drought stress | 33.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 115.190 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.163 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.925 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.518 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 204.999 |
| SRR2868004 | Drought Stress (root) | 44.379 |
| SRR2967015 | Control (root) | 57.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.781 |
| SRR9715740 | Leaf | 19.861 |
| SRR9715741 | Leaf | 15.605 |
| SRR9715739 | Root | 12.740 |
| SRR9715742 | Root | 8.704 |
| SRR9715743 | Root | 8.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.821 |
| SRR8749028 | MeJA induced 9h | 0.050 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.051 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 610.390 |
| SRR8400027 | Control - Root | 508.085 |