Gene detail

Gene detail information of Glyur000022s00002045

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	1.00E-86	S-locus lectin protein kinase family protein
NR	KEH30774.1	0	S-locus lectin kinase family protein [Medicago truncatula]
Swissprot	tr\|O81832\|Y4729_ARATH	4.00E-100	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|A0A072ULW3\|A0A072ULW3_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000022s00002045.1
ATGGACATTCTTCCCTTCATGATTATGGTTGCTTACATACTTGTTCCCTCTATAGCAACTAGTTCTATGATCAACGTGTCTCAGTCTATAAGTGATGGCCAAACCTTGGTGTCCCAAGCTGGAGTTTTTGAACTGGGTTTCTTCAGCCCAGGCAAATCTCAGAGACGCAATCTGGTGCTCAGCCAGAACGACTCTGTTGTGTGGCAAACAGCCTCAGACAAACAAGGACGGAACCCGGTGGCAGAGCTGTTGGACAGTGGCAATCTAGTGATAAGAAACGAGGGAGAAGAAACAGACTCAGAAGCGTACAAGTGGCAAAGCTTTGACTTTCCTTGTGATACAATTTTGCCAGGGATGAAGTTGGGATGGGACCTCCGAACTGGTCTGGAACGGAGAATAACATCATGGAAGAGTCCAGATGATCCATCCCCAGGAGACCTTTCATGGGGTCTGGCGCTCCATAACTATCCAGAGTTTTATCTGATGAACGGAACAGACAAGTACTGCCGCATTGGACCATGGAATGGCATTCAATTCAGTGGCTTGTCAGATAGAAAACCAAACCTAATATATGATTTCAAGTACGTTGCCAGTAATGATTTNAATTATGTGTCTAATAAGGATGAGATGTTCTACTCCTTTACCGTCAATAATTCCTCTTCCTTCGCGAGTGCCATGGTACACCAAACCAGATTTTCTATCACCGTGTGGGTGGACGACAATTCATATTGGGTGCTTTCTGAAAGCACCCCGAAGGACCAATGTGAAATGTATGGGGTCTGTGGACCCTATGCGAGTTGCTCANTCAATGATTCACCACTTTGCCAATGCTTACCTGGGTTCAGGCCAAAGTCACTACAAGCATGGGACTCATCAGACTGGAGTCAAGGATGTGTCCCTCGTATACCATTGAATTGCAGCGACGAACACGGGTTNATCAAATATAAAGGCATCAAAGTACCAGATACTACATATACTTTGGTGTATGAAAAGAATGTTGACCTGGAGGTATGCANAACCATGTGCTTGCGTAATTGCTCTTGTACTGCTTACACTAATTCAGACATAAGGGGAGGAGGTAGTGGCTGTGTCATGTGGTTTGGGGATCTAATCGACATAAGACAGTTTCCAACTGGTGGCCAAGATCTATATATCCGTTTGGCTGCTCAGTCATTAGTTGACTCCGAAGTTGACGCTGAGGAGCCTTCACACCACCGCGTGAGAACCATAGTCGCTGCTACCACCGCTGCTGCAATTTCTGGGATGCTTTTGTTTTGCATTTACGTTTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	403847	405589	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002045.1	PF01453.19	B_lectin	56	143	4.60E-23
Glyur000022s00002045.1	PF00954.15	S_locus_glycop	170	285	3.70E-27
Glyur000022s00002045.1	PF08276.6	PAN_2	306	373	1.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.183
SRR1783600	control	0.245
SRR1783602	moderate drought stress	0.481
SRR1811619	moderate drought stress	0.442

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.025
DRR006520	Root Summer glycyrrhizin high producing strain	0.949
DRR006521	Root Winter glycyrrhizin high producing strain	0.653
DRR006522	Root Winter glycyrrhizin high producing strain	0.716
DRR006523	Root Summer glycyrrhizin low producing strain	1.006
DRR006524	Root Summer glycyrrhizin low producing strain	1.298
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.542

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.173
SRR2868004	Drought Stress (root)	5.108
SRR2967015	Control (root)	4.805

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.010
SRR9715740	Leaf	6.845
SRR9715741	Leaf	23.875
SRR9715739	Root	0.888
SRR9715742	Root	7.373
SRR9715743	Root	5.638

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.691
SRR8749028	MeJA induced 9h	10.048
SRR8749029	MeJA induced 9h	5.733
SRR8749030	Uninduced	11.209
SRR8749031	Uninduced	7.825
SRR8749032	Uninduced	6.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.153
SRR8400027	Control - Root	3.616