Gene detail

Gene detail information of Glyur000022s00002044

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54530.1	1.00E-43	Protein of unknown function, DUF538
NR	XP_004505418.1	4.95E-89	PREDICTED: uncharacterized protein LOC101511689 [Cicer arietinum]
trEMBL	tr\|I3SN87\|I3SN87_LOTJA	9.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:AFK41729.1}

Sequence

Transcript Sequence

>Glyur000022s00002044.1
TGGGTGTAGAGAAGTACGGACACATAAAATATGGTTGCAAATTATAAACCTCAACCATAGAAGAACCAAAGTCACCAACCAAGGGCAACATAGTCATTCCACAAATCCATGACATTTTCTTAAAACAGTACTCTTTACATTTTCCACCCTCTCTCAGTCCCCTCTCTTGTGTGTGTCAAAAACAAAAACTCCCCCTCCTTAACCTTAAACCCCCTCCATGTTCCTTTCTCTTTTTGGTCTAAGCAAGCATGGTGATGGCATTCTTTAACACTCCCTTCACCTTCACAGTATTTTGTTACCTCTCTCTCCTCCTCCTTCTTCTCTCTTCCCCACTCTCTCTCTCCTCCTCCATTCATGACCTTCTCCGCTCAAAAGGGCTACCAGCTGGTCTATTACCAGAAGAGGTAAAGTCCTTCACTTTCTCAGAAAATGGTCGCTTGGAAGTGTTTCTGGATGCACCTTGCTTGACCCAGTATGAGAATAGGGTCTTCTTTGAACGCGTTGTCACTGCTAACCTCACCTATGGAAGCCTCATAGGTGTGGAGGGTCTGCAACAGGAAGAGCTTTTTGTGTGGCTACCTGTCAAGGACATCATTGTGGATGATCCAACATCAGGGTTGATACTCTTTGACATTGGCCTCGCTTATAAACAGCTTTCTCTCTCTCTTTTCGAAGTTCCGCCTCACTGTAAGCCCCAAGGTGGGGTGAAGAATCATGTGAGGAAGGAGAAAGGCTTCGAAGCCCTGAGGTAGAAAAAGANGCCAACCCTGTTTTCGGGCTTCAGTTATTGTCTTTTTCCATGTCATGTTTATATACTTTTTGGCCTTGCAACTATAGTCATATGTGTAGGGGTTTTTTTTTTAGAGTAGAGGTTGAGAGCATGTAAAGATGTGGGAGGGAGAAAAAAAAACTGTGGAATCTGATGTCCTAGTCAAATTTACAAGTTGTTATCTTTCTTAATTTTGTTCATTAGCTTAGCTGATCGTTTTGATCTGGTTGAAGATCAAAAGATATGTTAAGTGTCAAAGCAAAGGATCAAATCTAGGCTGTGTTTTCTCAAAGCAATGACTTGGAAACTTGCCTACGAAAATGGGGGGAAAAGNTATTTGGAATATGTTAATTGTCCCTTCATTTTTTGCCTTTCTGGCATTTTGATATTACAACTGGATACTTTTTGTTCAGGGAATAACAGATTGGAAAAATTGATTGGGATTCTTCTCAATATTTTTTTCCCACTTAGGTCCAAAAAGTTATCTAAATCGTCGAGGCTTATACACACATATAGATCTATATGACAAAAGAATATTTAACTTTGAGATACAGATACTTGAAAGGAGAAAAGCCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	394412	396664	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002044.1	PF04398.7	DUF538	35	143	1.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.367
SRR1783600	control	41.430
SRR1783602	moderate drought stress	53.391
SRR1811619	moderate drought stress	53.753

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.188
DRR006520	Root Summer glycyrrhizin high producing strain	42.635
DRR006521	Root Winter glycyrrhizin high producing strain	1.491
DRR006522	Root Winter glycyrrhizin high producing strain	1.529
DRR006523	Root Summer glycyrrhizin low producing strain	41.262
DRR006524	Root Summer glycyrrhizin low producing strain	40.595
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.490
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.531
SRR2868004	Drought Stress (root)	15.991
SRR2967015	Control (root)	15.388

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.336
SRR9715740	Leaf	1.996
SRR9715741	Leaf	1.366
SRR9715739	Root	36.875
SRR9715742	Root	17.046
SRR9715743	Root	20.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.348
SRR8749028	MeJA induced 9h	0.900
SRR8749029	MeJA induced 9h	2.116
SRR8749030	Uninduced	2.740
SRR8749031	Uninduced	3.828
SRR8749032	Uninduced	2.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.743
SRR8400027	Control - Root	37.045