Gene detail

Gene detail information of Glyur000022s00002041.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20650.2	3.00E-162	mRNA capping enzyme family protein
NR	XP_003531699.1	0	PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LHQ7\|MCES1_ARATH	0	mRNA cap guanine-N7 methyltransferase 1
trEMBL	tr\|K7L7W0\|K7L7W0_SOYBN	0	mRNA cap guanine-N7 methyltransferase {ECO:0000256\|PIRNR:PIRNR028762}

Sequence

Transcript Sequence

>Glyur000022s00002041.1
CCGGTCCAATCCACTAATCATAATTCAGCAGGAGTTATTAGGTCCCGTTCCCCTTCACCGCCACCATCTCCCATAGATTCTATAAATCCTTCTACAGACACCAAATCCCGCTGATCTTTTTGTCTCATCTTCANCCTCCAAACTCCTCTTTAATCAAACAAACCCCACTGTCAGCACAAAACAATACCCCGATCCTCCTCCCTTGTTTTCTGCAAACAGAAGGAACAAAAACAACAACAACTTGGGAACACATTCGATTGTCTCTCTGACACCACCATCGCTTCTTGCAGCATCACCCACACACACAAAGAGTGAGTGTCAGGCAGCGTATACTGTCATTCTTCATCGGTCCTCATGAAACGAGGATACCAGGAATCTCCTTTAACCTCTTCCGGTCCACCTCAATCCAAAGCAAGACATGATCCTCAAGGTGATGGACACTTTCTGGAGGATGAAAGCACAAAGATTTTTGCTCGGAAAGTAGCTGATCATTACAGTGCAAGATCCAACCAGACTCTGGAAGAACGGGAGGCTAGTCCAATTATTCATTTGAAGAAGCTTAATAATTGGATTAAGAGCGTCCTGATTCAGCTTTATGCTCGTAGAGGAGATGCAGTACTTGACCTTGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGACAAGGCCAAAGTTGGGTATTATGTTGGTATTGACATTGCTGAAGGCTCGATCAAAGACTGTCGTACACGTTACAATGGCGATGCTGACCATCATCAGCGACGTAAGAAGTTTACATTTCCTGCTCGTCTCATATGTGGAGACTGTTATGAGGTTCGCTTGGACAAAGTTCTAGCAGATGATGCTCCTTTCGATATTTGTAGTTGCCAGTTTGCATTGCATTACTCCTGGTCTACTGAGGCCCGTGCTCGGCAAGCATTATCTAATGTGTCAGCTTTACTCCGTCCTGGGGGCATTTTCATTGGAACAATGCCTGATGCCAATAAATTTAAATCTTCCAGCCCCTTTGGAATAAAGTACACGTTCCATTTGGAGGATGCTGTAGATTGTCCGGAATGGATTGTTCCCTTTCACGTATTCAAGTCATTAGCTGAAGAGTATGACTTTGAACTTGTTTTCGCAAAGAACTCACATGAATTTGTGCACGAGTATATGAAAAAACCGGATTTTGTGGAGCTCATGCGACGACTTGGTGCATTGGGGGATGGCAACCAAGATCAGAGTACACTCTCAGCTGATGAATGGGAAGCAGCATATTTATACATGTCATTTGTATTGAGAAAGCGAGGTCAACCAGACAAAAACCAAACGAGTGGCAGAAAAGACCGAGGGTTAATGCATATTTCAGAGGAAGACATAATGTATATTAGCAGTGATTAACATGAATAAAACNACCAGTGCCAATACAATTAATCTCACAACTTCAAGCACTAGGAAATTTTTTCTCTGCAAGACGCAAGACAACACGTTGTATTTTTCAGGTCCAAAATAAATAATTGAAACAAATTTTCTGCCTCAGAATTTGTGTTACCTTGGATGAGAATTCTGGCTGTGTAATTTTTACCAACTCTAATACTAATATTTACTTCCCTGTTATGCTGCACTGCACACGATAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	375573	380964	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00565	RNMT	EC:2.1.1.56	mRNA surveillance pathway	map03015

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002041.1	PF03291.11	Pox_MCEL	33	212	1.70E-65
Glyur000022s00002041.1	PF03291.11	Pox_MCEL	213	311	9.00E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.662
SRR1783600	control	18.583
SRR1783602	moderate drought stress	16.388
SRR1811619	moderate drought stress	16.258

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.156
DRR006520	Root Summer glycyrrhizin high producing strain	25.381
DRR006521	Root Winter glycyrrhizin high producing strain	62.255
DRR006522	Root Winter glycyrrhizin high producing strain	60.571
DRR006523	Root Summer glycyrrhizin low producing strain	24.398
DRR006524	Root Summer glycyrrhizin low producing strain	24.924
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.356
SRR2868004	Drought Stress (root)	32.200
SRR2967015	Control (root)	32.094

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.306
SRR9715740	Leaf	17.646
SRR9715741	Leaf	17.968
SRR9715739	Root	3.077
SRR9715742	Root	11.805
SRR9715743	Root	11.107

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.929
SRR8749028	MeJA induced 9h	31.740
SRR8749029	MeJA induced 9h	62.311
SRR8749030	Uninduced	46.083
SRR8749031	Uninduced	46.463
SRR8749032	Uninduced	45.659

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.994
SRR8400027	Control - Root	22.285