Gene detail

Gene detail information of Glyur000022s00002040.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54570.1	3.00E-86	beta glucosidase 41
NR	XP_006582227.1	0	PREDICTED: beta-glucosidase 25-like isoform X5 [Glycine max]
COG	YP_001708930.1	2.00E-37	beta-glucosidase [Clavibacter michiganensis subsp. sepedonicus]
Swissprot	tr\|Q0DA21\|BGL25_ORYSJ	7.00E-105	Beta-glucosidase 25 (Precursor)
trEMBL	tr\|A0A072UN16\|A0A072UN16_MEDTR	2.00E-139	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH30766.1}

Sequence

Transcript Sequence

>Glyur000022s00002040.1
ATGAATGCTAGTCTTTTCATTACTCTTTTCCTCATAACCCAACTCCTTGTAAAAGTAGAATCAATAAGCAGAGCAGATTTTCCAGATGGGTTCATCTTTGGAACTGCTTCTTCAGCTTACCAGTTTGAGGGAGCTGTTGATGAAGGAAATAAAGGAGATAGCATATGGGACACTTTCTCAAGGATACCAGGGAGAATTGTGGACTTCAGTAATGCAGACATGGCAGTAGATCAATATCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCTATATCATGGCCAAGAATTTTTCCAAATGGAACAGGGGAACCCAATACAGAGGGAATAAAATATTACAACAATCTCATTGATGCTTTATTGGAAAAAGGAACCACAAGGGGGTTCCTTGACCCGCTTTTCTTTGGAAAATACCCTCTCTCAATGCAAAAACTTGTAGCCGAGAGATTGCCAGAGATTACTGATGCAACTTCAAACTTGCTTGTGGGGTCTTTGGATTTTATTGGCATAAACCACTACACCTCAGTGTATACCCGTAACGATAGGACTCGGATTCATAAACTGGTTATGCAAGATGCTGCATCTGATGCTGCTGTCATCACAACCGCATACCGAAGAGGAGCTGCAATTGGAGAAAGGGCAGCTTCAAGTTGGCTACACATTGTACCATGGGGAATCCGAAAGTTGGTGAGATATGTGAAGAGCAAATATGGGAACACACCAGTAATAATCACAGAGAATGGCAAATTTTCTATGACAGGAATGGATGATCCAAGCAGACCCTTTATGACCTTACAAAAGGCATTAAATGACGACAAGAGGATAAGATACCATAGGGACTATCTCTCAAACCTATCTGCTGCTATAAAGCAAGATGGTTGCAATGTGAGGGGTTACTTTGTGTGGTCATTGCTTGACAATTGGGAGTGGAACTTGGGATACACTGTGCGCTTTGGGCTCTACTATGTGGATTTCAAGAACAACCTTACTAGGATACCAAAAGCTTCTGTGCAATGGTTCAAAAACATGCTCAGATTGGAAACTAAAGAGATTAGTGAAATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	371546	374931	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002040.1	PF00232.13	Glyco_hydro_1	25	133	5.90E-48
Glyur000022s00002040.1	PF00232.13	Glyco_hydro_1	136	354	1.70E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.451
SRR1783600	control	0.368
SRR1783602	moderate drought stress	0.402
SRR1811619	moderate drought stress	0.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.745
DRR006520	Root Summer glycyrrhizin high producing strain	0.924
DRR006521	Root Winter glycyrrhizin high producing strain	0.117
DRR006522	Root Winter glycyrrhizin high producing strain	0.219
DRR006523	Root Summer glycyrrhizin low producing strain	0.621
DRR006524	Root Summer glycyrrhizin low producing strain	0.530
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.892
SRR2868004	Drought Stress (root)	7.363
SRR2967015	Control (root)	6.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.459
SRR9715740	Leaf	0.102
SRR9715741	Leaf	0.371
SRR9715739	Root	0.136
SRR9715742	Root	0.188
SRR9715743	Root	0.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.140
SRR8749028	MeJA induced 9h	0.328
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.140
SRR8749032	Uninduced	0.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.279
SRR8400027	Control - Root	1.643