Gene detail information of Glyur000022s00002015 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54650.2 | 1.00E-171 | formin homology5 |
| NR | XP_004505472.1 | 0 | PREDICTED: formin-like protein 5-like [Cicer arietinum] |
| Swissprot | tr|Q94B77|FH5_ARATH | 0 | Formin-like protein 5 |
| trEMBL | tr|G7JF38|G7JF38_MEDTR | 0 | Formin-like protein {ECO:0000256|RuleBase:RU361260} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00022 | 274774 | 281436 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000022s00002015.1 | PF02181.18 | FH2 | 564 | 968 | 7.00E-108 |
| Glyur000022s00002015.2 | PF02181.18 | FH2 | 564 | 668 | 2.30E-25 |
| Glyur000022s00002015.3 | PF02181.18 | FH2 | 1 | 288 | 2.20E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.050 |
| SRR1783600 | control | 9.035 |
| SRR1783602 | moderate drought stress | 7.730 |
| SRR1811619 | moderate drought stress | 7.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.803 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.485 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.676 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.605 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.906 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.883 |
| SRR2868004 | Drought Stress (root) | 27.978 |
| SRR2967015 | Control (root) | 21.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.414 |
| SRR9715740 | Leaf | 32.845 |
| SRR9715741 | Leaf | 89.061 |
| SRR9715739 | Root | 20.714 |
| SRR9715742 | Root | 76.668 |
| SRR9715743 | Root | 65.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.655 |
| SRR8749028 | MeJA induced 9h | 28.145 |
| SRR8749029 | MeJA induced 9h | 34.561 |
| SRR8749030 | Uninduced | 53.037 |
| SRR8749031 | Uninduced | 62.813 |
| SRR8749032 | Uninduced | 48.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.450 |
| SRR8400027 | Control - Root | 20.707 |