Gene detail

Gene detail information of Glyur000022s00002013

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G54670.1	kinesin 3
NR	XP_003540037.1	PREDICTED: kinesin-3-like isoform 1 [Glycine max]
Swissprot	tr\|P46875\|ATK3_ARATH	Kinesin-3
trEMBL	tr\|I1LSN9\|I1LSN9_SOYBN	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000022s00002013.1
CATCACTCTTTCTCATCTTTCTGCCTGCCAAAGCAACGGTTTTGATAAATTGTTGTTAGCTTTCAATACAATCCATGGAAGGCCCCACACACTAGTCACAGTGTCACANTCTCTCTCCCTCTTCCCTCGTACCTCTCCAGCTGAGTAGTGCTTTGTGCTTCAAATGGTCACCAAAAACCAAAACCGGCCTCCATTATCATCACTCACACCCACATTTCCAACCCCTTCAAAGAACTTTGTGGGAGATGAGCTCCTCCTAGATAAAGGGCAACAAGTTGGAGCAGAAAAAATGGTGGGGACTCCAGTTAATGGAAGAACAAGGCAAGCTTTTACGATTGTAAATGGTGGGCATGATCTTGGCCCAAGTAGTGCTCCTCCAAGCAATGCTGGATCGGATTATGGGATAATAGAGTTCACAAGAGAGGATGTGGAAGCATTGCTAAATGAAAAGGCTAAAAGGAAAGACAGATTTAATTATAAGGAAAGGTGTGAAAATATGGTGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGATGAGCTACTCACTAGAGCAGGAAAAGTTAAAGAATTCACTGGAAATGACCCAGCAAAAATGTATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAGGAACTAAATTCAATTATTGGAGAAATGAGAAGGAATTGCACTTCTTTACAAGAGAAATTGATAAAGGAAGAATCAGAAAAGTCGGTTGCAGTGGAAGCTCTTGATAAAGAGAGAGAGGCTAGGCTTAATATTGAGAGGTCAGAGACTACTCTGTCCGAGGACCTCGGAAGAGCTCAACGAGAGATTCAGAGTGCAAATCAGAAGATATCTTCGCTAAATGACATGTATAAGCGGTTACAAGATTACATAACAAGCTTACAACAGTACAATGGAAAACTTCACACAGAGCTTTCAACAGTTGAAGATGACCTCAAACGTGTGGAGAAAGAGAAGTCTACTGTAATGGAGGACATCACCATGTTGAGGANTCAACTTACTTTATCCATTTCTTCTCAAGAAGAGGCCATAAAACAGAAGGATGGTCTGGCTAGTGAAGTTGCTACTCTTAGAGGAGAGTTGCAACAAGTAAGAGNTGAACGAGATCGTCAATTATCTCAAGTGCAAGGTTTAAATGCTGATTTATTGAAATTCAAAGAATCTAAGGAAAATTCCTGCATTGAATTGGACAACTTGACATTAAAAGCCACCGAACTGGAGGCAAACTGTTCTTTGAAAGATAATCAAATAAAGGCATTGCAAGAAAAGTTAGCAACTGCAGAGAAGCAACTGCAGGCATCTGATATATCTGCATTCNAGACAAGGACAGAATTTGAAGGGCAACAGAAATGTGTAGATGAGTTACAGAGACGATTGGCAGATGCTGAAAATAAACTTATAGAAGGGGAAAGGCTACGGAAAAAATTACATAATACTATTTTGGAGTTAAAAGGGAACATCCGTGTATTCTGTCGGGTGAGGCCTTTGTTGCATGATGAAAGTTGTAGCACAGAANGCAAGCTTTTCAGTTATCCGGCATCGATGGAAGCTTTTGGACGAGGCATTGACTTAGCCCAAAATGGCCAGAAACATTCTTTTACATTTGATAAAGTTTTTACACCAGAGGCGTCACAAGAAGAAGTTTTTGTAGAAATTTCACAGCTTGTTTGCATCTTTGCCTATGGGCAGACAGGGTCGGGGAAAACCTATACAATGATGGGCAGGCCTGGACATCCAGCGGAAAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAGACAAAACAATCTCAGCAACCTCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAAACCATTCGCGATCTGATATCTACAAACAGATCATCATCTGATGCAACACGCCTGGAAAATGGTACTCCTGGAAAGCAATATACAATCAAACACGATGCAAGTGGAAATACACAAGTTTCTGATCTTACAGTAGTGGATGTTCATAGTGCAAAAGAGGTCACATTTCTTTTAAATCAAGCTGCGAATAGCAGATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTAAATGAGAGCACTGACCAACAAGTGCAAGGTGTTCTGAATCTTATAGACCTTGCTGGTAGTGAGCGTCTTTCGAAGAGTGGGTCAACAGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTGTCATCATTGAGTGATGTCATATTTGCCTTGGCCAAGAAGGAAGACCATGTGCCATTCAGGAACTCAAAGCTTACATATCTGCTTCAACCTTGTCTGGGTGGGGACTCCAAGACATTAATGTTTGTAAACATCTCACCTGATCCTTCTTCGGTTGGCGAGTCACTATGCTCACTCAGGTTTGCTTCCAGAGTGAATGCTTGCGAGATTGGAACACCGCGTCGTCAGGCCAATGCACGTGCGACAGACTCTCGTCTGAGCTATTTCTGATCTTCAGAAAAGGAGCATGTATATTTGTTTTTAACCATTTGTGGGGCAATCAAGTGCCTGTGTGAGTACTACAATAAAATGAAAATGAGTTTGATTCTAACAACGGCATGTAGCTTGTATAGTGAAGTTACCAAGTATGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	262927	268497	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002013.1	PF00225.18	Kinesin	447	770	5.20E-100

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.783
SRR1783600	control	1.808
SRR1783602	moderate drought stress	0.968
SRR1811619	moderate drought stress	0.952

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.144
DRR006520	Root Summer glycyrrhizin high producing strain	7.191
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.016
DRR006524	Root Summer glycyrrhizin low producing strain	1.999
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.358
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.517
SRR2868004	Drought Stress (root)	5.440
SRR2967015	Control (root)	5.669

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.574
SRR9715740	Leaf	0.410
SRR9715741	Leaf	0.348
SRR9715739	Root	0.168
SRR9715742	Root	0.743
SRR9715743	Root	1.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.965
SRR8749028	MeJA induced 9h	1.249
SRR8749029	MeJA induced 9h	1.339
SRR8749030	Uninduced	0.418
SRR8749031	Uninduced	0.432
SRR8749032	Uninduced	0.325

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.067
SRR8400027	Control - Root	8.053