Gene detail

Gene detail information of Glyur000022s00002012

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11530.1	2.00E-37	C-terminal cysteine residue is changed to a serine 1
NR	XP_003607703.1	3.31E-72	Thioredoxin-like protein [Medicago truncatula]
COG	YP_001547167.1	5.00E-16	thioredoxin [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q8LDI5\|CXXS1_ARATH	7.00E-47	Thioredoxin-like protein CXXS1
trEMBL	tr\|G7JF34\|G7JF34_MEDTR	1.00E-72	Thioredoxin {ECO:0000256\|PIRNR:PIRNR000077}

Sequence

Transcript Sequence

>Glyur000022s00002012.1
CTGAGTTTCACTGACATGCGTGCTTATATAAAATGGGCTACTCTACTTGGCACTCATCTCTCACTGGAAATCAACAGAATTTGGCTGTGAAAATGACATGAACACATGATCTCTATCTAAAATTGTTAGTTCCTCAGGGGAAAGAGAAACCTCAAGGTTCAACATTTTTGTTGGCAGTTTTTAGCCTACCAAAAGTGAAAGACTAGATAGTGGTAGCTGTATGTGTCCCACAGAGATGTATATGGTCCATTGCCCACACCACTGACACGAAACAAGAAGTTGCCAATTTTTAGTGTGATTTTGAATGTCAACATAACATGAGTCTCTGAGCAAAGCCGACAACTAGCAAGATGTGTTCTTTAATTTGACAAAATTCTTTGTTATGTTTTTTTTTATTATTATTTAATATTTATTAATAGATGATTTAAGGGTTTGTCTAACTGTGACTTGATTCGATGCATGAACCACATGAGCATGGCGCCATGGCCACAGAATTGGCTAAAACAAAGGCCCCAGCTAGATTAGATTGGTTATATCCTGTGCTATATATGTGTGTGTCATTTCAATTGGTGTCTTATTATGAAGAAAAATATCAGTATTTCTTCTACAGTGTAGCTTATCTAATCTCATATTTCCTTCCATAGTGTATATATATAGATACAAAACAACACCCTTTTGAAGAAAGCAGCAGCAGCAGAAAAAAATGGCTGGCCAACATCAGTCCAAAAGGTCCAAGGTTGTGAAAATTGACTCAAGGGAATCATGGGAACACCATATCACTGAAGCTACCAATAAAGGCTTCCCTGTTATGGTTCATTTCTCTGCTTACTGGTGCATGCCTTGTACATCTATGAACCCTTTCTTTGATGAACTGGCCTCCACCTATCAAGATGTCCTCTTTCTGAAGGTGGATGTGGACGAGGTTAAGGAAGTAGCCTCCAAGTTGGAAATCAAAGCCATGCCAACCTTTTTGTTGATGAGTGGAGGAGCTACTGTGGAGAAAATTGTTGGAGCAAATCCTGATGAGATAAGGAAAAGGGTCGATAGTTTTATTCACCAAAATCATTCCTCCAAAAATCTCACTCTGATGCATGAACACATTGAACAGAGTTTGCCACAGCTGTAAATAAGACCTACAAGTTTTTTATTTATAATTTAAAATATTATTCATTTCATCGTGTATATTATAAATTCCAAGAAAGAGATGTTAATTTTTTTTATATTATTTGTAAAATTTGTGTTTGGTGTCGGTATGAATTGAAGTTGTGAAGTTGATGTATTGCAAAAGGGTATTTTATTGAATTTATTCATAATGCTATTTTCTCTTTAAATATTCTTTGAGGTCGCATATGCACCTCATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	256046	258751	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006662 glycerol ether metabolic process

GO:0045454 cell redox homeostasis

molecular_function
GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002012.1	PF00085.15	Thioredoxin	14	114	5.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.187
SRR1783600	control	0.161
SRR1783602	moderate drought stress	0.206
SRR1811619	moderate drought stress	0.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.318
DRR006520	Root Summer glycyrrhizin high producing strain	0.315
DRR006521	Root Winter glycyrrhizin high producing strain	26.781
DRR006522	Root Winter glycyrrhizin high producing strain	26.272
DRR006523	Root Summer glycyrrhizin low producing strain	0.810
DRR006524	Root Summer glycyrrhizin low producing strain	0.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.068
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.793
SRR2868004	Drought Stress (root)	39.229
SRR2967015	Control (root)	58.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.191
SRR9715740	Leaf	0.223
SRR9715741	Leaf	0.216
SRR9715739	Root	0.000
SRR9715742	Root	0.101
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.157
SRR8749028	MeJA induced 9h	248.801
SRR8749029	MeJA induced 9h	69.015
SRR8749030	Uninduced	382.550
SRR8749031	Uninduced	396.125
SRR8749032	Uninduced	468.461

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.628
SRR8400027	Control - Root	5.658