Gene detail

Gene detail information of Glyur000022s00002009

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54690.1	0	galacturonosyltransferase 12
NR	XP_003543290.1	0	PREDICTED: probable galacturonosyltransferase 12-like [Glycine max]
COG	YP_007080337.1	6.00E-11	LPS:glycosyltransferase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9FH36\|GAUTC_ARATH	0	Probable galacturonosyltransferase 12
trEMBL	tr\|I1M3I1\|I1M3I1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G36280.1}

Sequence

Transcript Sequence

>Glyur000022s00002009.1
TGTCTCTTTCTCTTTAACAACCCTCTTCCACATAATTCTTCACAACAACATTAAAGCCTTCAAAGTTCAAACCCCATGACATGCCTGTCCCAAATGCTAAGCAAGGTTAGGTGAAAGATCGCAACTTTAACCTTAAGTACCATCAAAACCTTCCTTTTACAGCAAAACCTTACGTGGGTTATTGCAGTTCTCCTCTGNTGTTGATCAGGTAGTGAATTGCCTGATGAAGAAAACTACTACTACTACTACCCATTGAAGAGGAGGGAGGGACTCATAGCACTGCTGCTTCTGCTTTTGGTGTTGCCCTGCCTTCTTGTGTAATTTGGACAAAATGCTGCTGCAGATATCACCAAGTTTGAGGCATGTCACTGTACTTCCGGGAAAAGGGTTGAAGGAGTTTATCAAAGTGAGGGTTGCATCAAGGAGGCTTTCTTATCGGATGCTCCTCTATTTACTCTTGTTCTTCGCTTTCCTTCTGCGGTTTGTGTTTGTTTTGACAGCAGTGGATGGCATTGATGGTGAAAACAAGTGCTCTACCATAGGTTGCCTGGGAAAAAGACTGAGGCCAAAGATTTTAGGAAGAAGTCCTGAATCAACTGTCCCAGAAGTGATATACGGAATATTAGATCAACCCCTTGGTAAAGATGAACTGGAGGGAAGATCTGATATTCCTCAGACTTTAGAAGAGTTCATGACCGAAATGAAGAAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTACGAGAAATGGTAAACCTTATGGAACAAAGGACCAGGACAGCCAAAATTCAAGAATATTTATATCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCACTGCCTAGACTTGAGGCTGGCCAATGAGCACACCAACAATGCAGCGGCACGCCTTCGGCTACCCTCTGCNGAACTTGTCCCTGCCCTGGTTGACAACTCCTACTTCCACTTTGTCCTTGCCTCAGACAATGTGCTGGCTGCCTCTGTGGTTGCAAAATCACTTGTTCACAACAGTTTGCAACCTCACAAAGTTGTTCTGCACATAATTACAGATAGAAAGACTTATTATCCCATGCATGCTTGGTTTTCGTTGCACCCTTTATCACCTGCTATAATTGAGGTNAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAAGTNCCTGTGATGGAGGCAATGGAAAAAGATCAACACGTGCGATCACGGTTTAGAGGCGGTTCATCAGCTATAGTTGCAAATGCTAGTGAGAAGCCGAATGTTATCGCAGCAAAGCTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAATCACATTCGGATACATCTTCCAGAGTTGTTCCCAAGTCTTAACAAGGTGGTCTTCCTCGACGATGACATTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACATGAAAGGAAAAGTCAATGGAGCAGTAGAAACATGCACTGGAGAAGATAAGTTTGTGATGTCAAAGAGGTTAAAAAGCTATTTGAACTTCTCCCACCCTCTGATATCCAAAAATTTCGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTTGACCTGGAGGCTTGGAGGAAGACCAATATAAGCTCTACATACCATTACTGGGTTGGGCAGAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACATGCTGGGATTAGGATACCAGGAAGATACAAGTTCTGCTGATGCTGAGAATGCTGGGGTCATCCATTTCAATGGCAGGGCAAAGCCATGGTTAGATATAGCTTTTCCACAACTAAGGCCATTGTGGACCAAGTATATTGACCTTTCGGACCACTTCATCAAGAGCTGTCACATTAGGGCATCATAGCTTGGATCTTGAGAAAATGTGACCTTCTTGATGAGTTGAAAGAAAAGGTACTTGCACAGGAGGGAAGGCGAAAATGAGAGGATTTCTAANCGCAAGTCCATCCATCACAAAGAAGAGATAACAATCACATGGGCCATGGCATAATGCTCCCTTCTTGTTTTAATTTGTTTTTTCAACTCTTCAGCTCTTCAGTTAAAANTTTCGAATTCTCTTTCTCTTCAATCCATATTGTAAGTATGAGTATTTGCAAATCATATATTTGTGTATAAAGAAAATGCAGTTTTTCTGTGAAACAAAAACACAAGCTAGTGGCTTAAGAATAAGCGCCCTGTAAGATGAAGAAATAAAAGATTTTGAAGGAGNGACAAAAGGATCACTCAATCCTATTTCGTTGCTATTTACACAATATATCACATTAACAACATAGCTTTTACTGTGTATTTGATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	244931	248616	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002009.1	PF01501.15	Glyco_transf_8	211	505	4.50E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.491
SRR1783600	control	0.493
SRR1783602	moderate drought stress	0.502
SRR1811619	moderate drought stress	0.567

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.236
DRR006520	Root Summer glycyrrhizin high producing strain	5.064
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	4.903
DRR006524	Root Summer glycyrrhizin low producing strain	5.094
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.832
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.916

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.550
SRR2868004	Drought Stress (root)	6.148
SRR2967015	Control (root)	3.747

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.280
SRR9715740	Leaf	2.866
SRR9715741	Leaf	2.245
SRR9715739	Root	0.323
SRR9715742	Root	2.072
SRR9715743	Root	1.792

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.247
SRR8749028	MeJA induced 9h	0.064
SRR8749029	MeJA induced 9h	0.174
SRR8749030	Uninduced	0.129
SRR8749031	Uninduced	0.627
SRR8749032	Uninduced	0.386

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.054
SRR8400027	Control - Root	0.944