Gene detail

Gene detail information of Glyur000022s00002008

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54730.1	5.00E-137	homolog of yeast autophagy 18 (ATG18) F
NR	XP_007132977.1	0	hypothetical protein PHAVU_011G140900g [Phaseolus vulgaris]
Swissprot	tr\|Q9FH32\|AT18F_ARATH	2.00E-166	Autophagy-related protein 18f
trEMBL	tr\|V7ALE8\|V7ALE8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04971.1}

Sequence

Transcript Sequence

>Glyur000022s00002008.1
CCATTTTTAATTTTTTGCGGGTTTCAATCGAAGTAAGAAAAAAAAAGGAAAATTTTTTAAACCTTTTTTTTCCTTTGATTTTTTTTTCTTTCTCTCGCCCGAACGGTTTTCCTCGCTGCTGTTGTATTTTTCTTCGGTGTTTTGTTTTGAGGGAAAAACACGAAAAAGGAGAAAATTTTTGGAGGCGAGTTTTGTTTTGGGGTGGTTGTGAATTGGATGGTTTCTGCGACGTTAAGGACATGGAGACACTTGTGACCTTATCTGTTACAAATTTGTGATTTTTGTTTTATCTTTTTGTAAATTTTGTTTTGTTTATTGATGGTGGAAGAAGAGGGTGATGATTGAATATAAGGGTGAATTTGAAGTATCGGTGGTGCCCAATTTGTTGTTNTTGTTGTTGTGGCTAGCTGTTATTTTCATCTCTTTGGTTTTTGGAATGAGTAGGAATGATGACCAGCACCTTCATCAAGGAGATGGTGCTGGTAGTGGTAGTGGAAATGGTGGCAAAACAAACAGCAACAGCAATGGCTTTATTCCCAGCTCCTTCCGTGCTCTNTCCGGCTACCTGAGGATTGTTTCCTCTGGTGCTTCCACTGTTGCCCGNTCCGCAGCGGCGTCTGTTGCCTCATCAATTGTGGACAGTGATGATGATGCTGACCGTGATCAGGTTATTTGGGCTGGGTTTGACAAATTAGAGGGTAAGGGAGAAGTCATTCGGCAAGTCCTTCTTCTAGGCTATCGGTCTGGCTTCCAGGTTTGGGATGTTGATGATTCAAATAATGTCTGTAACCTAGTCTCAAGACACGATGATCCTGTTTCTTTTATGCAAATGATACCGAGCCCAATCACAACAAAGAAACCAGAAGACAAATTTGCAGACAGGCGTCCATTGTTGGTAGTTTGTACAGGTGGTTTCTTTGCTGGTAGAAGCAATATCCAAGATGGGTTGACCACCCCAAGCAATGGGNACATTCTAAACTGCCATGACCAAGTGAATGGAAACTATCTGCCAACTACTGTTCAGTTTTATTCTATGAGCTCCCAATCATATGTTCATGTATTAAAGTTTAGATCGGCTGTTTTTTCTGTAAGGTGCAGTTCTCGAATAGTCGCTGTTTCTCAAACCACTCAGATACACTGTTTTGATGTCACAACTTTAGAAAGAGCATATACTATACTTACCAATCCTATAGCCATGAGTTGTCCTGGTTCTCGAGCCATTGGCTATGGACCACTTGCGGTGGGTCCTAGATGGCTTGCTTATAGTGGAAGNCCAGTTGCTGTTGCCACTCCTGGGCGTGTCGGCCCACAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGGAGCTTGGTTGTACACTATGCCAAAGAGTCCAGCAAGCATCTAGCTGCTGGAATTTTGACCCTTGGAGATAAGGGGTATAAGAAACTTTCCAGATACTGCACAGAGCTTCTCCCTGATAGCATTGGTTCTTTACAATCCGTAAATTCTGGCTCAAAGGAAAATGGGATTGTTAATGGCCGTTCAACAGATGCGGATAGCATTGGAATGGTCATTGTGAGAGATATAGTCAATAAAAAGGTTGTTTCCCAATTCCAGGCCCACGAGAGTCCTATTTCAGCTTTATGCTTTGATCCTAGTGGCTCCATATTAGTGACTGCTTCCATTCAGGGGCATAACATTAATGTTTTTAAGATAATGTGTCGATATGAGAGTTTGCCAGCATCTGATGCCAGCCCTTCCTATGTTCATCTCTACAGGCTGCAACGTGGCTTTACAAATGCGGTTATACAGGATATCAGTTTTAGCTTTGATAGCAAATGGATTATGATTAGTTCCTCAAGGGGCACTAGCCATCTATTTGCTATAAATCCTGAAGGAGGACCTGTAAATATTCAGTCAGATGATGACAGTTCAACAGGAAAAAATGGTGGATTGGGTGTTATGACTAATCAAGCTGTTCACCAGCCTCATGGTTCCACCTTGGAAATTTCTAAACAACAGAGCCTCTGTGNTCCTGGCCCTCCAATCACACTTTCTGTTGTAAGCAGAATTAGGAATGGATCTAATGGCTGGAGAGGTGCTGTAACTGGTGCTGCTGCAGCTGCAACGGGTAGGATGAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCTGTAACTTCAAAGGAAGCAGTGCCTTGTATGTTGACGGGAACTATTCCAAGGACAAGTATCATCTGTTGGTCTTTTCACCCACTGGTTGTTTGATACAGTATGCTCTGCAGACATTTAACGGTCAAGATTCAGCTGTTGTTTCTGGATTAATGCCTNCTTATGAATCCGCTCCTCAGACTGATGCAAGAGTAGTAGTTGAGGCTATCCAGAAATGGAATATAAGTGGAAGAGAGCAAGAGGATAATATTGACATATATGGAGATAAAGGAATTTTAGATGGCACTAACTTATATCCAAATGAATTGAAGGATAATATTGTTAACCCTATAATCAAGAATGTAGCCATGAAACCTAATTCCTGTCCTGAGAAAGAGCATAATTTGTATATTTCAGAAGCTGAACTGCAAATGCATCAAGATAAGATTCCATTGTGGGAAAAGACCGAGATATATTTTCATCCAATGGGTAAAGAGGCTACTATGATGATGGATGCAAAAGCTGCTTCAGGAGGGGAAATTGAGATTGAGAAGATTCCAACTCGCATGGTAGAAGCTAGGACAAAAGACTTGATTCCAATCTTTGACTATATGCGGACCCCAAAGTTTCAAGAAATGAGGACACCTGCTGTGGATAACCAGTTAAATGAAAAGGCAAGGATTTCACCCAGGAACGTTTTGGGATCTCCTGAGTGTATGACTAGTTCTGGTGGTCCTATTGCTGAATTTAAAAGTGGGATTGAAGGAAATAAGTGGGATGGTCATTTGATTCAAGCAGAAACAAAGGGTTTTGTAAATAACAATGACACCCTTAAACCAAATACTAGGCATGATGAGGTTGTAAATAATAGACAAGAGATCTTAAACATGGAGGCTCAACGCATGTTTGTAAATAGTGACAGAGAAGGCCTGAAAGTGGAGAATCACTTCGAAGAAGGGGATGAATTTGATTAAAGGTATGGGAGTTGTTCTTTCACTTCTTCACACGAGAGGCTTCATTAACACTGCTGATATTGTGGTTGGAGAGAGGTATAGGGGCTTGACTGCGATGCCAAAATGTGGATATACTACGCTGGGATTCTTCTGTTAACCTTGTTAATAAAATAACATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00022	236114	242181	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000022s00002008.1	PF00400.27	WD40	419	447	3.70E-05
Glyur000022s00002008.1	PF12490.3	BCAS3	566	802	2.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.253
SRR1783600	control	13.301
SRR1783602	moderate drought stress	18.014
SRR1811619	moderate drought stress	17.919

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.203
DRR006520	Root Summer glycyrrhizin high producing strain	24.941
DRR006521	Root Winter glycyrrhizin high producing strain	24.563
DRR006522	Root Winter glycyrrhizin high producing strain	23.650
DRR006523	Root Summer glycyrrhizin low producing strain	19.609
DRR006524	Root Summer glycyrrhizin low producing strain	19.979
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.728
SRR2868004	Drought Stress (root)	53.459
SRR2967015	Control (root)	51.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.278
SRR9715740	Leaf	15.459
SRR9715741	Leaf	21.685
SRR9715739	Root	2.975
SRR9715742	Root	13.070
SRR9715743	Root	11.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.011
SRR8749028	MeJA induced 9h	24.767
SRR8749029	MeJA induced 9h	23.281
SRR8749030	Uninduced	52.877
SRR8749031	Uninduced	82.204
SRR8749032	Uninduced	44.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.430
SRR8400027	Control - Root	32.407